Evidence map›Paper›PMID 31923184›Full record

ArticlePLoS genetics2020

Autophagy gene haploinsufficiency drives chromosome instability, increases migration, and promotes early ovarian tumors.

Joe R Delaney, Chandni B Patel, Jaidev Bapat, Christian M Jones, Maria Ramos-Zapatero, Katherine K Ortell, Ralph Tanios, Mina Haghighiabyaneh, Joshua Axelrod, John W DeStefano and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
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  9. Article
  10. Autophagy and cancer therapy.Cancer letters · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Joe R DelaneyUC San Diego Moores Cancer Center, La Jolla, California, United States of America.ORCID 0000-0002-8978-5961
Chandni B PatelUC San Diego Moores Cancer Center, La Jolla, California, United States of America.
Jaidev BapatUC San Diego Moores Cancer Center, La Jolla, California, United States of America.ORCID 0000-0002-8964-1415
Christian M JonesDepartment of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, South Carolina, United States of America.ORCID 0000-0002-0914-2967
Maria Ramos-ZapateroUC San Diego Moores Cancer Center, La Jolla, California, United States of America.
Katherine K OrtellDepartment of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, South Carolina, United States of America.ORCID 0000-0003-3192-4452
Ralph TaniosDepartment of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, South Carolina, United States of America.ORCID 0000-0003-1189-0777
Mina HaghighiabyanehUC San Diego Moores Cancer Center, La Jolla, California, United States of America.
Joshua AxelrodUC San Diego Moores Cancer Center, La Jolla, California, United States of America.
John W DeStefanoDepartment of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, South Carolina, United States of America.
Isabelle TancioniUC San Diego Moores Cancer Center, La Jolla, California, United States of America.
David D SchlaepferUC San Diego Moores Cancer Center, La Jolla, California, United States of America.
Olivier HarismendyUC San Diego Moores Cancer Center, La Jolla, California, United States of America.ORCID 0000-0002-8098-9888
Albert R La SpadaDepartments of Neurology, Neurobiology, and Cell Biology, and the Duke Center for Neurodegeneration & Neurotherapeutics, Duke University School of Medicine, Durham, North Carolina, United States of America.
Dwayne G StupackUC San Diego Moores Cancer Center, La Jolla, California, United States of America.
University of California San Diego · USMedical University of South Carolina · USDuke University · US

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIANE M SIMEONE · 1985 to 2026
$124.9M
Translational Science Laboratory Shared ResourceP30CA138313 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI RAYMOND N. DUBOIS · 2009 to 2026
$42.7M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PETER J TONTONOZ · 2003 to 2026
$40.4M
Role of Focal Adhesion Kinase In TumorigenesisR01CA102310 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SCHLAEPFER, DAVID D · 2003 to 2019
$5.0M
Molecular genetic regulation of autophagy in health and neurodegenerative diseaseR01AG033082 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LA SPADA, ALBERT R · 2009 to 2019
$4.0M
Cellular, Biochemical and Molecular Sciences Training Program: Developing the skills and expertise needed for a changing biomedical landscapeT32GM132055 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI Amy D Bradshaw, John P O'Bryan · 2019 to 2026
$3.9M
MAP4K3 regulation of cellular stress response pathways in health and diseaseRF1AG033082 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI LA SPADA, ALBERT R · 2022 to 2025
$3.3M
Integrins and Caspase 8 in Tumor ProgressionR01CA107263 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI STUPACK, DWAYNE G. · 2005 to 2014
$3.1M
MUSC Post-Baccalaureate Research Education ProgramR25GM113278 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI DELEON-PENNELL, KRISTINE Y, PENROD-MARTIN, RACHEL · 2015 to 2024
$2.7M
Dissecting FAK-regulated oncogenic signaling programs in ovarian cancerR01CA247562 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SCHLAEPFER, DAVID D, STUPACK, DWAYNE G. · 2020 to 2024
$2.3M
Copy Number Alterations in Low Mutation CancerR00CA207729 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI DELANEY, JOE R · 2019 to 2021
$730k
In vivo detection and genome-wide location analysis of DNA-adductsR21CA177519 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HARISMENDY, OLIVIER, HOWELL, STEPHEN B · 2013 to 2015
$667k
NCI NIH HHS K99 CA207729NCI NIH HHS P30 CA023100NCI NIH HHS P30 CA138313NCI NIH HHS R00 CA207729NCI NIH HHS R01 CA102310NCI NIH HHS R01 CA107263NCI NIH HHS R01 CA247562NCI NIH HHS R21 CA177519NIA NIH HHS R01 AG033082NIA NIH HHS RF1 AG033082NIDDK NIH HHS P30 DK063491NIGMS NIH HHS R25 GM113278NIGMS NIH HHS T32 GM132055
6 · The paper itself

Abstract

Autophagy, particularly with BECN1, has paradoxically been highlighted as tumor promoting in Ras-driven cancers, but potentially tumor suppressing in breast and ovarian cancers. However, studying the specific role of BECN1 at the genetic level is complicated due to its genomic proximity to BRCA1 on both human (chromosome 17) and murine (chromosome 11) genomes. In human breast and ovarian cancers, the monoallelic deletion of these genes is often co-occurring. To investigate the potential tumor suppressor roles of two of the most commonly deleted autophagy genes in ovarian cancer, BECN1 and MAP1LC3B were knocked-down in atypical (BECN1+/+ and MAP1LC3B+/+) ovarian cancer cells. Ultra-performance liquid chromatography mass-spectrometry metabolomics revealed reduced levels of acetyl-CoA which corresponded with elevated levels of glycerophospholipids and sphingolipids. Migration rates of ovarian cancer cells were increased upon autophagy gene knockdown. Genomic instability was increased, resulting in copy-number alteration patterns which mimicked high grade serous ovarian cancer. We further investigated the causal role of Becn1 haploinsufficiency for oncogenesis in a MISIIR SV40 large T antigen driven spontaneous ovarian cancer mouse model. Tumors were evident earlier among the Becn1+/- mice, and this correlated with an increase in copy-number alterations per chromosome in the Becn1+/- tumors. The results support monoallelic loss of BECN1 as permissive for tumor initiation and potentiating for genomic instability in ovarian cancer.

Indexed as

Chromosomal InstabilityHaploinsufficiencyAnimalsBeclin-1CarcinogenesisCell Line, TumorCell MovementFemaleMetabolomeMiceMicrotubule-Associated ProteinsOvarian NeoplasmsBeclin-1BECN1 protein, humanMAP1LC3B protein, humanMicrotubule-Associated Proteins

Identifiers

PMID31923184
PMCPMC6953790
OpenAlexW2999542179

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.