Evidence map›Paper›PMID 3192212›Full record

ArticleHuman genetics1988

Delineation of individual human chromosomes in metaphase and interphase cells by in situ suppression hybridization using recombinant DNA libraries.

P Lichter, T Cremer, J Borden, L Manuelidis, D C Ward

Abstract read
PubMed Publisher
In one paragraph

Article in Human genetics, 1988. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 302 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
302citing papers in PubMed, 1 pooled it
61.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

302 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,159 citations in OpenAlex.

  1. Pooled it
  2. Chromosome painting in plants: history and future perspectives.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
    Review
  3. Article
  4. Origin and evolution of acrocentric chromosomes in human and great apes.bioRxiv : the preprint server for biology · 2025
    Article
  5. OligoY pipeline for full Y chromosome painting.Briefings in bioinformatics · 2025
    Article
  6. Review
  7. Review
  8. Review
  9. Tracing the Chromatin: From 3C to Live-Cell Imaging.Chemical & biomedical imaging · 2024
    Review
  10. Article
  11. Optical Genome Mapping: A Machine-Based Platform in Cytogenomics.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  12. Article
  13. Review
  14. Multi-Scale Imaging of the Dynamic Organization of Chromatin.International journal of molecular sciences · 2023
    Review
  15. Article
  16. TowardMolecular breeding : new strategies in plant improvement · 2023
    Article
  17. Article
  18. The art of painting chromosome loops.Quantitative plant biology · 2023
    Article
  19. Article
  20. Macromolecular Structure of Linearly Arranged Eukaryotic Chromosomes.International journal of molecular sciences · 2022
    Review

242 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

P LichterDepartment of Human Genetics, Yale University School of Medicine, New Haven, CT 06510.
T Cremer
J Borden
L Manuelidis
D C Ward
Yale University · US

Funding

NEW METHODS FOR ANALYZING HUMAN GENES AND THEIR DEFECTSP50GM032156 · NIGMS · YALE UNIVERSITY · PI WARD, DAVID C · 1985 to 1988
–
PATHOGENETIC DETERMINANTS OF HUMAN CNS TUMORSR01CA015044 · NCI · YALE UNIVERSITY · PI MANUELIDIS, LAURA · 1985 to 1994
–
CHROMOSOME DOMAINS IN INTERPHASE CELLSR01GM040115 · NIGMS · YALE UNIVERSITY · PI WARD, DAVID C · 1989 to 1993
–
NCI NIH HHS CA-15044NIGMS NIH HHS GM-32156NIGMS NIH HHS GM-40115
6 · The paper itself

Abstract

A method of in situ hybridization for visualizing individual human chromosomes from pter to qter, both in metaphase spreads and interphase nuclei, is reported. DNA inserts from a single chromosomal library are labeled with biotin and partially preannealed with a titrated amount of total human genomic DNA prior to hybridization with cellular or chromosomal preparations. The cross-hybridization of repetitive sequences to nontargeted chromosomes can be markedly suppressed under appropriate preannealing conditions. The remaining single-stranded DNA is hybridized to specimens of interest and detected with fluorescent or enzyme-labeled avidin conjugates following post-hybridization washes. DNA inserts from recombinant libraries for chromosomes 1, 4, 7, 8, 13, 14, 18, 20, 21, 22, and X were assessed for their ability to decorate specifically their cognate chromosome; most libraries proved to be highly specific. Quantitative densitometric analyses indicated that the ratio of specific to nonspecific hybridization signal under optimal preannealing conditions was at least 8:1. Interphase nuclei showed a cohesive territorial organization of chromosomal domains, and laser-scanning confocal fluorescence microscopy was used to aid the 3-D visualization of these domains. This method should be useful for both karyotypic studies and for the analysis of chromosome topography in interphase cells.

Indexed as

DNA ProbesDNA, RecombinantNucleic Acid HybridizationChromosomes, HumanHumansInterphaseKaryotypingMetaphaseDNA ProbesDNA, Recombinant

Identifiers

PMID3192212
OpenAlexW2116302199

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.