Evidence map›Paper›PMID 31921064›Full record

ArticleFrontiers in microbiology2019

Soil Microbial Networks Shift Across a High-Elevation Successional Gradient.

Emily C Farrer, Dorota L Porazinska, Marko J Spasojevic, Andrew J King, Clifton P Bueno de Mesquita, Samuel A Sartwell, Jane G Smith, Caitlin T White, Steven K Schmidt, Katharine N Suding

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Biodiversity in mountain soils above the treeline.Biological reviews of the Cambridge Philosophical Society · 2025
    Review
  2. Article
  3. Article
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  5. Characteristics ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  6. Frontiers in microbiology · 2024
    Article
  7. Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Emily C FarrerDepartment of Ecology and Evolutionary Biology, Tulane University, New Orleans, LA, United States.
Dorota L PorazinskaDepartment of Entomology and Nematology, University of Florida, Gainesville, FL, United States.
Marko J SpasojevicInstitute of Arctic and Alpine Research, University of Colorado Boulder, Boulder, CO, United States.
Andrew J KingBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.
Clifton P Bueno de MesquitaInstitute of Arctic and Alpine Research, University of Colorado Boulder, Boulder, CO, United States.
Samuel A SartwellInstitute of Arctic and Alpine Research, University of Colorado Boulder, Boulder, CO, United States.
Jane G SmithInstitute of Arctic and Alpine Research, University of Colorado Boulder, Boulder, CO, United States.
Caitlin T WhiteInstitute of Arctic and Alpine Research, University of Colorado Boulder, Boulder, CO, United States.
Steven K SchmidtDepartment of Ecology and Evolutionary Biology, University of Colorado Boulder, Boulder, CO, United States.
Katharine N SudingInstitute of Arctic and Alpine Research, University of Colorado Boulder, Boulder, CO, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While it is well established that microbial composition and diversity shift along environmental gradients, how interactions among microbes change is poorly understood. Here, we tested how community structure and species interactions among diverse groups of soil microbes (bacteria, fungi, non-fungal eukaryotes) change across a fundamental ecological gradient, succession. Our study system is a high-elevation alpine ecosystem that exhibits variability in successional stage due to topography and harsh environmental conditions. We used hierarchical Bayesian joint distribution modeling to remove the influence of environmental covariates on species distributions and generated interaction networks using the residual species-to-species variance-covariance matrix. We hypothesized that as ecological succession proceeds, diversity will increase, species composition will change, and soil microbial networks will become more complex. As expected, we found that diversity of most taxonomic groups increased over succession, and species composition changed considerably. Interestingly, and contrary to our hypothesis, interaction networks became less complex over succession (fewer interactions per taxon). Interactions between photosynthetic microbes and any other organism became less frequent over the gradient, whereas interactions between plants or soil microfauna and any other organism were more abundant in late succession. Results demonstrate that patterns in diversity and composition do not necessarily relate to patterns in network complexity and suggest that network analyses provide new insight into the ecology of highly diverse, microscopic communities.

Indexed as

16S18Sbacteriadiversityfungiinteraction networkITSjoint distribution model

Identifiers

PMID31921064
PMCPMC6930148

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.