Evidence map›Paper›PMID 31921018›Full record

ArticleFrontiers in microbiology2019

Cas12a-Based On-Site and Rapid Nucleic Acid Detection of African Swine Fever.

Jing Bai, Haosi Lin, Haojian Li, Yang Zhou, Junshan Liu, Guorui Zhong, Luting Wu, Weifan Jiang, Hongli Du, Jinyi Yang and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
25.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 150 citations in OpenAlex.

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  18. Rapid and Sensitive Detection of ToxigenicInternational journal of molecular sciences · 2023
    Article
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13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Jing BaiSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, China.
Haosi LinSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, China.
Haojian LiSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, China.
Yang ZhouSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, China.
Junshan LiuSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, China.
Guorui ZhongSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, China.
Luting WuSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, China.
Weifan JiangSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, China.
Hongli DuSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, China.
Jinyi YangCollege of Food Science, South China Agricultural University, Guangzhou, China.
Qingmei XieCollege of Animal Science, South China Agricultural University, Guangzhou, China.
Lizhen HuangSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, China.
South China University of Technology · CNSouth China Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mortality rate of hemorrhagic African swine fever (ASF), which targets domestic pigs and wild boars is caused by African swine fever virus (ASFV), can reach 100%. Since the first confirmed ASF outbreak in China on 3 August 2018, 156 ASF outbreaks were detected in 32 provinces. About 1,170,000 pigs were culled in order to halt further spread. There is no effective treatment or vaccine for it and the present molecular diagnosis technologies have trade-offs in sensitivity, specificity, cost and speed, and none of them cater perfectly to ASF control. Thus, a technology that overcomes the need for laboratory facilities, is relatively low cost, and rapidly and sensitively detects ASFV would be highly valuable. Here, we describe an RAA-Cas12a-based system that combines recombinase aided amplification (RAA) and CRISPR/Cas12a for ASFV detection. The fluorescence intensity readout of this system detected ASFV p72 gene levels as low as 10 aM. For on-site ASFV detection, lateral-flow strip readout was introduced for the first time in the RAA-Cas12a based system (named CORDS, Cas12a-based On-site and Rapid Detection System). We used CORDS to detect target DNA highly specifically using the lateral-flow strip readout and the assay displayed no cross-reactivity to other 13 swine viruses including classical swine fever (CSF). CORDS could identify the ASFV DNA target at femtomolar sensitivity in an hour at 37°C, and only requires an incubator. For ease of use, the reagents of CORDS were lyophilized to three tubes and remained the same sensitivity when stored at 4°C for at least 7 days. Thus, CORDS provide a rapid, sensitive and easily operable method for ASFV on-site detection. Lyophilized CORDS can withstand long-term transportation and storage, and is ready for field-based applications.

Indexed as

African swine feverCRISPR/Cas12alateral flow stripnucleic acid detectionon-site detection

Identifiers

PMID31921018
PMCPMC6916198
OpenAlexW2994990179

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.