Evidence map›Paper›PMID 31919393›Full record

ArticleScientific reports2020

Computational exploration of molecular receptive fields in the olfactory bulb reveals a glomerulus-centric chemical map.

Jan Soelter, Jan Schumacher, Hartwig Spors, Michael Schmuker

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  3. Frontiers in cell and developmental biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 2 countries.

Jan SoelterNeuroinformatics & Theoretical Neuroscience, Freie Universität Berlin, Königin-Luise-Str. 1-3, 14195, Berlin, Germany.
Jan SchumacherMax-Planck-Institute for Biophysics, Max-von-Laue-Str. 3, 60438, Frankfurt/Main, Germany.
Hartwig SporsMax-Planck-Institute for Biophysics, Max-von-Laue-Str. 3, 60438, Frankfurt/Main, Germany.
Michael SchmukerNeuroinformatics & Theoretical Neuroscience, Freie Universität Berlin, Königin-Luise-Str. 1-3, 14195, Berlin, Germany. m.schmuker@biomachinelearning.net.ORCID http://orcid.org/0000-0001-6753-4929
Freie Universität Berlin · DEJustus-Liebig-Universität Gießen · DEMax Planck Institute of Biophysics · DEUniversity of Hertfordshire · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Progress in olfactory research is currently hampered by incomplete knowledge about chemical receptive ranges of primary receptors. Moreover, the chemical logic underlying the arrangement of computational units in the olfactory bulb has still not been resolved. We undertook a large-scale approach at characterising molecular receptive ranges (MRRs) of glomeruli in the dorsal olfactory bulb (dOB) innervated by the MOR18-2 olfactory receptor, also known as Olfr78, with human ortholog OR51E2. Guided by an iterative approach that combined biological screening and machine learning, we selected 214 odorants to characterise the response of MOR18-2 and its neighbouring glomeruli. We found that a combination of conventional physico-chemical and vibrational molecular descriptors performed best in predicting glomerular responses using nonlinear Support-Vector Regression. We also discovered several previously unknown odorants activating MOR18-2 glomeruli, and obtained detailed MRRs of MOR18-2 glomeruli and their neighbours. Our results confirm earlier findings that demonstrated tunotopy, that is, glomeruli with similar tuning curves tend to be located in spatial proximity in the dOB. In addition, our results indicate chemotopy, that is, a preference for glomeruli with similar physico-chemical MRR descriptions being located in spatial proximity. Together, these findings suggest the existence of a partial chemical map underlying glomerular arrangement in the dOB. Our methodology that combines machine learning and physiological measurements lights the way towards future high-throughput studies to deorphanise and characterise structure-activity relationships in olfaction.

Indexed as

AnimalsBrain MappingCluster AnalysisFemaleMachine LearningMaleMiceMicroscopy, ConfocalOdorantsOlfactory BulbReceptors, OdorantSmall Molecule LibrariesSmellStructure-Activity RelationshipOlfr78 protein, mouseReceptors, OdorantSmall Molecule Libraries

Identifiers

PMID31919393
PMCPMC6952415
OpenAlexW2999311157

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.