Evidence map›Paper›PMID 31919352›Full record

ArticleNature communications2020

Structural basis for itraconazole-mediated NPC1 inhibition.

Tao Long, Xiaofeng Qi, Abdirahman Hassan, Qiren Liang, Jef K De Brabander, Xiaochun Li

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 73 citations in OpenAlex.

  1. Review
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  8. Molecular insights into human phosphatidylserine synthase 2 and its regulation of SREBP pathways.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. Article
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  13. Conformational changes in the Niemann-Pick type C1 protein NCR1 drive sterol translocation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Article
  15. Review
  16. Cellular and molecular mechanisms of Hedgehog signalling.Nature reviews. Molecular cell biology · 2023
    Review
  17. Article
  18. Lysosome-targeted multifunctional lipid probes reveal the sterol transporter NPC1 as a sphingosine interactor.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Tao LongDepartment of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.ORCID http://orcid.org/0000-0002-5899-8913
Xiaofeng QiDepartment of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Abdirahman HassanDepartment of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.ORCID http://orcid.org/0000-0002-3967-9802
Qiren LiangDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Jef K De BrabanderDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Xiaochun LiDepartment of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA. xiaochun.li@utsouthwestern.edu.ORCID http://orcid.org/0000-0002-0177-0803
The University of Texas Southwestern Medical Center · USSouthwestern Medical Center · US

Funding

TRANSCRIPTIONAL REGULATION OF LDL RECEPTOR PROMOTERP01HL020948 · NHLBI · UT SOUTHWESTERN MEDICAL CENTER · PI GOLDSTEIN, JOSEPH L · 1985 to 2021
$103.1M
Examining Mechanism and Physiological Significance of HMG CoA Reductase ER-Associated DegradationR01GM134700 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI DEBOSE-BOYD, RUSSELL ALFRED, LI, XIAOCHUN · 2019 to 2022
$1.7M
Structural and Functional investigations of Hedgehog Signaling TransductionR01GM135343 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI LI, XIAOCHUN · 2019 to 2022
$1.2M
NHLBI NIH HHS P01 HL020948NIGMS NIH HHS R01 GM134700NIGMS NIH HHS R01 GM135343
6 · The paper itself

Abstract

Niemann-Pick C1 (NPC1), a lysosomal protein of 13 transmembrane helices (TMs) and three lumenal domains, exports low-density-lipoprotein (LDL)-derived cholesterol from lysosomes. TMs 3-7 of NPC1 comprise the Sterol-Sensing Domain (SSD). Previous studies suggest that mutation of the NPC1-SSD or the addition of the anti-fungal drug itraconazole abolishes NPC1 activity in cells. However, the itraconazole binding site and the mechanism of NPC1-mediated cholesterol transport remain unknown. Here, we report a cryo-EM structure of human NPC1 bound to itraconazole, which reveals how this binding site in the center of NPC1 blocks a putative lumenal tunnel linked to the SSD. Functional assays confirm that blocking this tunnel abolishes NPC1-mediated cholesterol egress. Intriguingly, the palmitate anchor of Hedgehog occupies a similar site in the homologous tunnel of Patched, suggesting a conserved mechanism for sterol transport in this family of proteins and establishing a central function of their SSDs.

Indexed as

AnimalsAntifungal AgentsBinding SitesBiological TransportCell LineCHO CellsCholesterolCricetinaeCricetulusCryoelectron MicroscopyHEK293 CellsHumansIntracellular Signaling Peptides and ProteinsItraconazoleNiemann-Pick C1 ProteinPatched-1 ReceptorAntifungal AgentsCholesterolIntracellular Signaling Peptides and ProteinsItraconazoleNiemann-Pick C1 ProteinNPC1 protein, humanPatched-1 Receptor

Identifiers

PMID31919352
PMCPMC6952396
OpenAlexW2999269724

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.