Evidence map›Paper›PMID 31919107›Full record

ArticleJournal of the American Society of Nephrology : JASN2020

Large-Scale Whole-Genome Sequencing Reveals the Genetic Architecture of Primary Membranoproliferative GN and C3 Glomerulopathy.

Adam P Levine, Melanie M Y Chan, Omid Sadeghi-Alavijeh, Edwin K S Wong, H Terence Cook, Sofie Ashford, Keren Carss, Martin T Christian, Matthew Hall, Claire Louise Harris and 15 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. Systematic review of associations between HLA and renal function.International journal of immunogenetics · 2022
    Pooled it
  2. From data to drug: the translational impact of RaDaR, the UK national registry of rare kidney diseases.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2026
    Review
  3. The Genomic Infinity Loop.Journal of the American Society of Nephrology : JASN · 2026
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Review
  10. Acquired drivers of C3 glomerulopathy.Clinical kidney journal · 2025
    Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. A clinical approach to children with C3 glomerulopathy.Pediatric nephrology (Berlin, Germany) · 2022
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 10 institutions in 1 country.

Adam P LevineDepartment of Renal Medicine, University College London, London, United Kingdom.
Melanie M Y ChanDepartment of Renal Medicine, University College London, London, United Kingdom.
Omid Sadeghi-AlavijehDepartment of Renal Medicine, University College London, London, United Kingdom.
Edwin K S WongRenal Department, Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, United Kingdom.
H Terence CookCentre for Inflammatory Disease, Department of Immunology and Inflammation, Imperial College London, London, United Kingdom.
Sofie AshfordNational Institute of Health Research BioResource, Cambridge University Hospitals, Cambridge, United Kingdom.
Keren CarssNational Institute of Health Research BioResource, Cambridge University Hospitals, Cambridge, United Kingdom.
Martin T ChristianChildren's Renal and Urology Unit, Nottingham Children's Hospital, Queen's Medical Centre, Nottingham University Hospitals NHS Trust, Nottingham, United Kingdom.
Matthew HallDepartment of Nephrology, Nottingham University Hospitals NHS Trust, Nottingham, United Kingdom.
Claire Louise HarrisFaculty of Medical Sciences, Translational & Clinical Research Institute, Newcastle University, Newcastle upon Tyne, United Kingdom.ORCID 0000-0003-0845-1730
Paul McAlindenRenal Department, Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, United Kingdom.
Kevin J MarchbankFaculty of Medical Sciences, Translational & Clinical Research Institute, Newcastle University, Newcastle upon Tyne, United Kingdom.ORCID 0000-0003-1312-5411
Stephen D MarksDepartment of Paediatric Nephrology, Great Ormond Street Hospital and University College London Great Ormond Street Institute of Child Health, NIHR Great Ormond Street Hospital Biomedical Research Centre, London, United Kingdom.
Heather MaxwellDepartment of Paediatric Nephrology, Royal Hospital for Children, NHS Greater Glasgow and Clyde, Glasgow, United Kingdom.
Karyn MegyNational Institute of Health Research BioResource, Cambridge University Hospitals, Cambridge, United Kingdom.
Christopher J PenkettNational Institute of Health Research BioResource, Cambridge University Hospitals, Cambridge, United Kingdom.
Monika MozereDepartment of Renal Medicine, University College London, London, United Kingdom.
Kathleen E StirrupsNational Institute of Health Research BioResource, Cambridge University Hospitals, Cambridge, United Kingdom.
Salih TunaNational Institute of Health Research BioResource, Cambridge University Hospitals, Cambridge, United Kingdom.
Julie WesselsRenal Department, University Hospitals of North Midlands NHS Trust, Stoke-on-Trent, United Kingdom.
Deborah WhitehornNational Institute of Health Research BioResource, Cambridge University Hospitals, Cambridge, United Kingdom.
MPGN/DDD/C3 Glomerulopathy Rare Disease Group
NIHR BioResource
Sally A JohnsonFaculty of Medical Sciences, Translational & Clinical Research Institute, Newcastle University, Newcastle upon Tyne, United Kingdom.
Daniel P GaleDepartment of Renal Medicine, University College London, London, United Kingdom; d.gale@ucl.ac.uk.ORCID 0000-0002-9170-1579
University of Cambridge · GBUniversity College London · GBRoyal Victoria Infirmary · GBNottingham University Hospitals NHS Trust · GBGreat Ormond Street Hospital · GBImperial College London · GBNewcastle University · GBNewcastle upon Tyne Hospitals NHS Foundation Trust · GBNHS Greater Glasgow and Clyde · GBUniversity Hospitals of North Midlands NHS Trust · GB

Funding

Department of Health BH141504Department of Health PD00400Department of Health RG65966Medical Research Council G1002528Medical Research Council MR/K023519/1Medical Research Council MR/S021329/1
6 · The paper itself

Abstract

backgroundPrimary membranoproliferative GN, including complement 3 (C3) glomerulopathy, is a rare, untreatable kidney disease characterized by glomerular complement deposition. Complement gene mutations can cause familial C3 glomerulopathy, and studies have reported rare variants in complement genes in nonfamilial primary membranoproliferative GN.

methodsWe analyzed whole-genome sequence data from 165 primary membranoproliferative GN cases and 10,250 individuals without the condition (controls) as part of the National Institutes of Health Research BioResource-Rare Diseases Study. We examined copy number, rare, and common variants.

resultsOur analysis included 146 primary membranoproliferative GN cases and 6442 controls who were unrelated and of European ancestry. We observed no significant enrichment of rare variants in candidate genes (genes encoding components of the complement alternative pathway and other genes associated with the related disease atypical hemolytic uremic syndrome; 6.8% in cases versus 5.9% in controls) or exome-wide. However, a significant common variant locus was identified at 6p21.32 (rs35406322) (

conclusionsWe found that HLA type, but not rare complement gene variation, is associated with primary membranoproliferative GN. These findings challenge the paradigm of complement gene mutations typically causing primary membranoproliferative GN and implicate an underlying autoimmune mechanism in most cases.

Indexed as

Whole Genome SequencingComplement C3Complement C3 Nephritic FactorFemaleGlomerulonephritis, MembranoproliferativeHLA-DQ AntigensHLA-DR AntigensHumansMaleSerogroupComplement C3Complement C3 Nephritic FactorHLA-DQ AntigensHLA-DR AntigensC3 glomerulopathycomplementGenome-wide association studyHuman leukocyte antigenmembranoproliferative glomerulonephritis (MPGN)

Identifiers

PMID31919107
PMCPMC7003307
OpenAlexW2998859761

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.