Evidence map›Paper›PMID 31918995›Full record

ArticleGynecologic oncology2020

Differential expression of immune related genes in high-grade ovarian serous carcinoma.

Sharareh Siamakpour-Reihani, Lauren Patterson Cobb, Chen Jiang, Dadong Zhang, Rebecca A Previs, Kouros Owzar, Andrew B Nixon, Angeles Alvarez Secord

Open access · greenAbstract read
In one paragraph

Article in Gynecologic oncology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Sharareh Siamakpour-ReihaniDivision of Medical Oncology, Department of Medicine, Duke Cancer Institute, Duke University Medical Center, United States. Electronic address: shara.reihani@duke.edu.
Lauren Patterson CobbDivision of Gynecology Oncology, Department of Obstetrics and Gynecology, Duke Cancer Institute, Duke University Medical Center, Durham, NC 27710, United States.
Chen JiangBioinformatics Shared Resource, Duke Cancer Institute, United States. Electronic address: Chen.X.Jiang@kp.org.
Dadong ZhangBioinformatics Shared Resource, Duke Cancer Institute, United States. Electronic address: dadong.zhang@duke.edu.
Rebecca A PrevisDivision of Gynecology Oncology, Department of Obstetrics and Gynecology, Duke Cancer Institute, Duke University Medical Center, Durham, NC 27710, United States. Electronic address: rebecca.previs@duke.edu.
Kouros OwzarDuke Department of Biostatistics and Bioinformatics, Duke University Medical Center, United States; Bioinformatics Shared Resource, Duke Cancer Institute, United States. Electronic address: kouros.owzar@duke.edu.
Andrew B NixonDivision of Medical Oncology, Department of Medicine, Duke Cancer Institute, Duke University Medical Center, United States. Electronic address: andrew.nixon@duke.edu.
Angeles Alvarez SecordDivision of Gynecology Oncology, Department of Obstetrics and Gynecology, Duke Cancer Institute, Duke University Medical Center, Durham, NC 27710, United States. Electronic address: angeles.secord@duke.edu.
Duke Medical Center · USDuke Cancer InstituteDuke University Hospital · US

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI Laura Fish · 1985 to 2026
$174.8M
NCI NIH HHS P30 CA014236
6 · The paper itself

Abstract

objectiveTo identify novel immunologic targets and biomarkers associated with overall survival (OS) in high-grade serous ovarian cancer (HGSC).

methodsIn this retrospective study, microarray data from 51 HGSC specimens were analyzed (Affymetrix HG-U133A). A panel of 183 immune/inflammatory response related genes linked to 279 probe sets was constructed a priori and screened. Associations between gene expression and OS were assessed using logrank tests. Multiple testing was addressed within the False Discovery Rate (FDR) framework. For external validation, TCGA Ovarian dataset and five GSE publicly available HGSC datasets were evaluated.

resultsIn Duke data, 110 probe sets linked to 83 immunologic/inflammatory-related genes were differentially expressed in tumors from long versus short-term HGSC survivors (adjusted p < 0.05). In TCGA, concordant with the results from the Duke discovery cohort, high expression of one probe (IL6R) demonstrated a consistent significance and concordant association with higher expression in long-term HGSC survivors (Duke q-value = 0.022) and improved OS in the TCGA dataset (p-value = 0.015, HR = 0.8). Thirteen genes in GSE14764 (N = 4) and GSE26712 (N = 9) datasets had significant p-values and consistent concordant with Duke Data. Despite the significant associations of gene expression and OS in the individual GSE datasets, in the GSE meta-analysis no genes were consistently concordant and significantly associated with survival.

conclusionsEvaluation of IL6R expression may be warranted based on higher expression in long-term survivors and association with improved survival in advanced HGSC. The other candidate genes may also be of worthy of further exploration to enhance immuno-oncology drug discovery.

Indexed as

Antineoplastic Combined Chemotherapy ProtocolsBiomarkers, TumorCarcinoma, Ovarian EpithelialCystadenocarcinoma, SerousDatabases, GeneticFemaleGene ExpressionHumansMiddle AgedNeoplasm GradingOligonucleotide Array Sequence AnalysisOvarian NeoplasmsReceptors, Interleukin-6Retrospective StudiesBiomarkers, TumorIL6R protein, humanReceptors, Interleukin-6BiomarkersGene expressionHigh grade serous ovarian carcinomaImmunotherapyOverall survival

Identifiers

PMID31918995
PMCPMC7396156
OpenAlexW2999369495

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.