Evidence map›Paper›PMID 31918125›Full record

ArticleEnvironmental pollution (Barking, Essex : 1987)2020

PBMC gene expression profiles of female Bangladeshi adults chronically exposed to arsenic-contaminated drinking water.

Qiao Yi Chen, Steven Shen, Hong Sun, Fen Wu, Thomas Kluz, Muhammad G Kibriya, Yu Chen, Habibul Ahsan, Max Costa

Abstract read
In one paragraph

Article in Environmental pollution (Barking, Essex : 1987), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Review
  3. Epigenomic reprogramming in iAs-mediated carcinogenesis.Advances in pharmacology (San Diego, Calif.) · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Qiao Yi ChenDepartment of Environmental Medicine, New York University School of Medicine, 10010, New York, NY, USA. Electronic address: qyc203@nyu.edu.
Steven ShenInstitute of Health Informatics, University of Minnesota, 55455, Minneapolis, MN, USA.
Hong SunDepartment of Environmental Medicine, New York University School of Medicine, 10010, New York, NY, USA.
Fen WuDepartment of Population Health and Environmental Medicine, 10016, New York University School of Medicine, New York, NY, USA.
Thomas KluzDepartment of Environmental Medicine, New York University School of Medicine, 10010, New York, NY, USA.
Muhammad G KibriyaInstitute for Population and Precision Health, Department of Public Health Sciences, The University of Chicago, Chicago, IL, 60637, USA.
Yu ChenDepartment of Population Health and Environmental Medicine, 10016, New York University School of Medicine, New York, NY, USA.
Habibul AhsanInstitute for Population and Precision Health, Department of Public Health Sciences, The University of Chicago, Chicago, IL, 60637, USA.
Max CostaDepartment of Environmental Medicine, New York University School of Medicine, 10010, New York, NY, USA. Electronic address: Max.Costa@nyulangone.org.

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
Training CoreP42ES010349 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI NAVAS-ACIEN, ANA · 2000 to 2020
$53.6M
RESEARCH IN ENVIRONMENTAL HEALTH SCIENCES (CENTER GRANT)P30ES000260 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI COSTA, MAX · 1985 to 2020
$26.1M
Pilot Program CoreP30ES027792 · NIEHS · UNIVERSITY OF CHICAGO · PI Gokhan M. Mutlu, Gail S Prins · 2017 to 2026
$13.6M
Epigenetic Stress and Chromate CarcinogenesisR01ES029359 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI COSTA, MAX, JIN, CHUNYUAN · 2018 to 2022
$2.4M
SATB2 and Nickel CarcingenesisR01ES022935 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI COSTA, MAX · 2014 to 2018
$2.1M
Arsenic Carcinogenesis and Interference With Histone mRNAR01ES026138 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI COSTA, MAX, JIN, CHUNYUAN · 2016 to 2020
$1.9M
Enhancement and Maintenance of the HEALS cohortR24ES028532 · NIEHS · UNIVERSITY OF CHICAGO · PI AHSAN, HABIBUL · 2017 to 2022
$1.7M
NCI NIH HHS P30 CA016087NIEHS NIH HHS P30 ES000260NIEHS NIH HHS P30 ES027792NIEHS NIH HHS P42 ES010349NIEHS NIH HHS R01 ES022935NIEHS NIH HHS R01 ES026138NIEHS NIH HHS R01 ES029359NIEHS NIH HHS R24 ES028532
6 · The paper itself

Abstract

Arsenic, a class I human carcinogen, is ubiquitously found throughout the environment and around the globe, posing a great public health concern. Notably, Bangladesh and regions of West Bengal have been found to have high levels (0.5-4600 μg/L) of arsenic drinking water contamination, and approximately 50 million of the world's 200 million people chronically exposed to arsenic in Bangladesh alone. This study was carried out to examine genome-wide gene expression changes in individuals chronically exposed to arsenic-contaminated drinking water. Our study population includes twenty-nine Bangladeshi female participants with urinary arsenic levels ranging from 22.32 to 1828.12 μg/g creatinine. RNA extracted from peripheral blood mononuclear cells (PBMCs) were evaluated using RNA-Sequencing analysis. Our results indicate that a total of 1,054 genes were significantly associated with increasing urinary arsenic levels (FDR p < 0.05), which include 418 down-regulated and 636 up-regulated genes. Further Ingenuity Pathway Analysis revealed potential target genes (DAPK1, EGR2, APP), microRNAs (miR-155, -338, -210) and pathways (NOTCH signaling pathway) related to arsenic carcinogenesis. The selection of female-only participants provides a homogenous study population since arsenic has significant sex dependent effects, and the wide exposure range provides new insight for key gene expression changes that correlate with increasing urinary arsenic levels.

Indexed as

Arsenic PoisoningAdultArsenicBangladeshChromosome AberrationsDNA MethylationDrinking WaterEnvironmental ExposureFemaleGenome-Wide Association StudyHumansLeukocytes, MononuclearRNA-SeqTranscriptomeWater Pollutants, ChemicalArsenicDrinking WaterWater Pollutants, ChemicalArsenicBangladeshHEALSPBMCRNA-Seq

Identifiers

PMID31918125
PMCPMC11062206

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.