Evidence map›Paper›PMID 31917801›Full record

ArticlePloS one2020

Assessment of peritoneal microbial features and tumor marker levels as potential diagnostic tools for ovarian cancer.

Ruizhong Miao, Taylor C Badger, Kathleen Groesch, Paula L Diaz-Sylvester, Teresa Wilson, Allen Ghareeb, Jongjin Anne Martin, Melissa Cregger, Michael Welge, Colleen Bushell and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
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  13. The Role of the Human Microbiome in Epithelial Ovarian Cancer.Advances in experimental medicine and biology · 2024
    Review
  14. Review
  15. Review
  16. Article
  17. Microbiota as the unifying factor behind the hallmarks of cancer.Journal of cancer research and clinical oncology · 2023
    Review
  18. Article
  19. The Influence of the Microbiome on Metastatic Colorectal Cancer.Clinics in colon and rectal surgery · 2023
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Ruizhong MiaoDepartment of Statistics, University of Virginia, Charlottesville, Virginia, United States of America.
Taylor C BadgerDepartment of Medical Microbiology, Immunology and Cell Biology, SIU School of Medicine, Springfield, Illinois, United States of America.
Kathleen GroeschCenter for Clinical Research, SIU School of Medicine, Springfield, Illinois, United States of America.
Paula L Diaz-SylvesterCenter for Clinical Research, SIU School of Medicine, Springfield, Illinois, United States of America.ORCID 0000-0002-1531-1958
Teresa WilsonCenter for Clinical Research, SIU School of Medicine, Springfield, Illinois, United States of America.
Allen GhareebCenter for Clinical Research, SIU School of Medicine, Springfield, Illinois, United States of America.
Jongjin Anne MartinDepartment of Obstetrics & Gynecology, SIU School of Medicine, Springfield, Illinois, United States of America.
Melissa CreggerOak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America.
Michael WelgeNational Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America.
Colleen BushellApplied Research Institute, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America.ORCID 0000-0002-5268-1915
Loretta AuvilNational Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America.
Ruoqing ZhuDepartment of Statistics, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America.
Laurent BrardDepartment of Obstetrics & Gynecology, SIU School of Medicine, Springfield, Illinois, United States of America.
Andrea Braundmeier-FlemingDepartment of Medical Microbiology, Immunology and Cell Biology, SIU School of Medicine, Springfield, Illinois, United States of America.
Southern Illinois University School of Medicine · USUniversity of Illinois Urbana-Champaign · USOak Ridge National Laboratory · USUniversity of Virginia · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epithelial ovarian cancer (OC) is the most deadly cancer of the female reproductive system. To date, there is no effective screening method for early detection of OC and current diagnostic armamentarium may include sonographic grading of the tumor and analyzing serum levels of tumor markers, Cancer Antigen 125 (CA-125) and Human epididymis protein 4 (HE4). Microorganisms (bacterial, archaeal, and fungal cells) residing in mucosal tissues including the gastrointestinal and urogenital tracts can be altered by different disease states, and these shifts in microbial dynamics may help to diagnose disease states. We hypothesized that the peritoneal microbial environment was altered in patients with OC and that inclusion of selected peritoneal microbial features with current clinical features into prediction analyses will improve detection accuracy of patients with OC. Blood and peritoneal fluid were collected from consented patients that had sonography confirmed adnexal masses and were being seen at SIU School of Medicine Simmons Cancer Institute. Blood was processed and serum HE4 and CA-125 were measured. Peritoneal fluid was collected at the time of surgery and processed for Next Generation Sequencing (NGS) using 16S V4 exon bacterial primers and bioinformatics analyses. We found that patients with OC had a unique peritoneal microbial profile compared to patients with a benign mass. Using ensemble modeling and machine learning pathways, we identified 18 microbial features that were highly specific to OC pathology. Prediction analyses confirmed that inclusion of microbial features with serum tumor marker levels and control features (patient age and BMI) improved diagnostic accuracy compared to currently used models. We conclude that OC pathogenesis alters the peritoneal microbial environment and that these unique microbial features are important for accurate diagnosis of OC. Our study warrants further analyses of the importance of microbial features in regards to oncological diagnostics and possible prognostic and interventional medicine.

Indexed as

AgedAscitic FluidCA-125 AntigenCarcinoma, Ovarian EpithelialCross-Sectional StudiesDNA, BacterialFemaleHumansHysterectomyLaparoscopyMachine LearningMembrane ProteinsMicrobiotaMiddle AgedModels, BiologicalOvarian NeoplasmsCA-125 AntigenDNA, BacterialMembrane ProteinsMUC16 protein, humanRNA, Ribosomal, 16SWAP Four-Disulfide Core Domain Protein 2WFDC2 protein, human

Identifiers

PMID31917801
PMCPMC6952086
OpenAlexW2999240916

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.