Evidence map›Paper›PMID 31917800›Full record

ArticlePloS one2020

Characterization of black patina from the Tiber River embankments using Next-Generation Sequencing.

Federica Antonelli, Alfonso Esposito, Ludovica Calvo, Valerio Licursi, Philippe Tisseyre, Sandra Ricci, Manuela Romagnoli, Silvano Piazza, Francesca Guerrieri

Abstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Federica AntonelliDepartment of Innovation of Biological Systems, Food and Forestry (DIBAF), Tuscia University, Viterbo, Italy.
Alfonso EspositoDepartment of Cellular, Computational and Integrative Biology-CIBIO, University of Trento, Trento, Italy.
Ludovica CalvoCenter for Life NanoScience@Sapienza, Istituto Italiano di Tecnologia, Rome, Italy.
Valerio LicursiInstitute for Systems Analysis and Computer Science "Antonio Ruberti", National Research Council, Rome, Italy.
Philippe TisseyreSoprintendenza del Mare, Regione Sicilia, Palermo, Italy.
Sandra RicciBiology Laboratory, Istituto Superiore per la Conservazione e per il Restauro (ISCR), Rome, Italy.
Manuela RomagnoliDepartment of Innovation of Biological Systems, Food and Forestry (DIBAF), Tuscia University, Viterbo, Italy.
Silvano PiazzaDepartment of Cellular, Computational and Integrative Biology-CIBIO, University of Trento, Trento, Italy.
Francesca GuerrieriCenter for Life NanoScience@Sapienza, Istituto Italiano di Tecnologia, Rome, Italy.ORCID 0000-0002-2021-4394

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Black patinas are very common biological deterioration phenomena on lapideous artworks in outdoor environments. These substrates, exposed to sunlight, and atmospheric and environmental agents (i.e. wind and temperature changes), represent extreme environments that can only be colonized by highly versatile and adaptable microorganisms. Black patinas comprise a wide variety of microorganisms, but the morphological plasticity of most of these microorganisms hinders their identification by optical microscopy. This study used Next-Generation Sequencing (NGS) (including shotgun and amplicon sequencing) to characterize the black patina of the travertine embankments (muraglioni) of the Tiber River in Rome (Italy). Overall, the sequencing highlighted the rich diversity of bacterial and fungal communities and allowed the identification of more than one hundred taxa. NGS confirmed the relevance of coccoid and filamentous cyanobacteria observed by optical microscopy and revealed an informative landscape of the fungal community underlining the presence of microcolonial fungi and phylloplane yeasts. For the first time high-throughput sequencing allowed the exploration of the expansive diversity of bacteria in black patina, which has so far been overlooked in routine analyses. Furthermore, the identification of euendolithic microorganisms and weathering agents underlines the biodegradative role of black patina, which has often been underestimated. Therefore, the use of NGS to characterize black patinas could be useful in choosing appropriate conservation treatments and in the monitoring of stone colonization after the restoration interventions.

Indexed as

BacteriaConstruction MaterialsFungiHigh-Throughput Nucleotide SequencingItalyMicrobial ConsortiaRiversRomeWeather

Identifiers

PMID31917800
PMCPMC6952188

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.