Evidence map›Paper›PMID 31914418›Full record

ArticleThe Journal of biological chemistry2020

Processing and integration of functionally oriented prespacers in the

Anita Ramachandran, Lesley Summerville, Brian A Learn, Lily DeBell, Scott Bailey

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Review
  3. Toward DNA-Based Recording of Biological Processes.International journal of molecular sciences · 2024
    Review
  4. Review
  5. Article
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  15. Review
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  18. Digging into the lesser-known aspects of CRISPR biology.International microbiology : the official journal of the Spanish Society for Microbiology · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Anita RamachandranDepartment of Biochemistry and Molecular Biology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland 21205.
Lesley SummervilleDepartment of Biochemistry and Molecular Biology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland 21205.
Brian A LearnDepartment of Biochemistry and Molecular Biology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland 21205.
Lily DeBellDepartment of Biochemistry and Molecular Biology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland 21205.
Scott BaileyDepartment of Biochemistry and Molecular Biology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland 21205; Department of Biophysics and Biophysical Chemistry, School of Medicine, Johns Hopkins University, Baltimore, Maryland 21205. Electronic address: scott.bailey@jhu.edu.
Johns Hopkins University · US

Funding

TRAINING IN AREAS FUNDAMENTAL TO CANCER RESEARCHT32CA009110 · NCI · JOHNS HOPKINS UNIVERSITY · PI MATUNIS, MICHAEL J., WEERARATNA, ASHANI T · 1985 to 2025
$13.1M
Mechanistic Studies of the Type I CRISPR-Cas SystemR01GM097330 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BAILEY, SCOTT · 2011 to 2024
$4.2M
NCI NIH HHS T32 CA009110NIGMS NIH HHS R01 GM097330
6 · The paper itself

Abstract

CRISPR-Cas systems provide bacteria with adaptive immunity against viruses. During spacer adaptation, the Cas1-Cas2 complex selects fragments of foreign DNA, called prespacers, and integrates them into CRISPR arrays in an orientation that provides functional immunity. Cas4 is involved in both the trimming of prespacers and the cleavage of protospacer adjacent motif (PAM) in several type I CRISPR-Cas systems, but how the prespacers are processed in systems lacking Cas4, such as the type I-E and I-F systems, is not understood. In

Indexed as

Base SequenceClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Associated ProteinsDNA Polymerase IIIEscherichia coliEscherichia coli ProteinsExonucleasesNucleotide MotifsSequence Analysis, DNACRISPR-Associated ProteinsDNA Polymerase IIIdnaQ protein, E coliEscherichia coli ProteinsExonucleases3'-5' exonucleasebacterial immunityCRISPR/CasCRISPR-RNA (crRNA)deoxyribonuclease (DNase)DNADnaQintegraseprespacer processingprimed adaptationprotospacer adjacent motif (PAM)

Identifiers

PMID31914418
PMCPMC7076208
OpenAlexW2997588540

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.