Evidence map›Paper›PMID 31913305›Full record

ArticleScientific reports2020

A comprehensive global perspective on phylogenomics and evolutionary dynamics of Small ruminant morbillivirus.

Muhammad Zubair Shabbir, Aziz-Ul Rahman, Muhammad Munir

Erratum issuedAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Muhammad Zubair ShabbirUniversity of Veterinary and Animal Sciences, Lahore, 54600, Pakistan. shabbirmz@uvas.edu.pk.ORCID http://orcid.org/0000-0002-3562-007X
Aziz-Ul RahmanUniversity of Veterinary and Animal Sciences, Lahore, 54600, Pakistan.ORCID http://orcid.org/0000-0002-3342-4462
Muhammad MunirDivision of Biomedical and Life Sciences, Lancaster University, Lancaster, LA1 4YG, United Kingdom.ORCID http://orcid.org/0000-0002-7889-1398

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A string of complete genome sequences of Small ruminant morbillivirus (SRMV) have been reported from different parts of the globe including Asia, Africa and the Middle East. Despite individual genome sequence-based analysis, there is a paucity of comparative genomic and evolutionary analysis to provide overarching and comprehensive evolutionary insights. Therefore, we first enriched the existing database of complete genome sequences of SRMVs with Pakistan-originated strains and then explored overall nucleotide diversity, genomic and residue characteristics, and deduced an evolutionary relationship among strains representing a diverse geographical region worldwide. The average number of pairwise nucleotide differences among the whole genomes was found to be 788.690 with a diversity in nucleotide sequences (0.04889 ± S.D. 0.00468) and haplotype variance (0.00001). The RNA-dependent-RNA polymerase (L) gene revealed phylogenetic relationship among SRMVs in a pattern similar to those of complete genome and the nucleoprotein (N) gene. Therefore, we propose another useful molecular marker that may be employed for future epidemiological investigations. Based on evolutionary analysis, the mean evolution rate for the complete genome, N, P, M, F, H and L genes of SRMV was estimated to be 9.953 × 10

Indexed as

Biological EvolutionGenome, ViralPhylogenyAnimalsGenomicsPakistanPeste-des-Petits-RuminantsPeste-des-petits-ruminants virusWhole Genome Sequencing

Identifiers

PMID31913305
PMCPMC6949297

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.