Evidence map›Paper›PMID 31913284›Full record

ArticleNature communications2020

5-fluorocytosine resistance is associated with hypermutation and alterations in capsule biosynthesis in Cryptococcus.

R Blake Billmyre, Shelly Applen Clancey, Lucy X Li, Tamara L Doering, Joseph Heitman

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 111 citations in OpenAlex.

  1. Review
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  10. RapidmSphere · 2025
    Article
  11. Elevated UDP-glucuronic acid levels mend drug resistance and stress responses via a protease and a transporter inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Review
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  19. Transposon load and RNAi loss synergize to drive intraspecies diversity inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

R Blake BillmyreDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC, USA.ORCID http://orcid.org/0000-0003-4866-3711
Shelly Applen ClanceyDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC, USA.
Lucy X LiDepartment of Molecular Microbiology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Tamara L DoeringDepartment of Molecular Microbiology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Joseph HeitmanDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC, USA. heitm001@duke.edu.
Washington University in St. Louis · USDuke Medical Center · USDuke University · USStowers Institute for Medical Research · US

Funding

Rapid production of SARS-CoV-2 molecular clones using CRISPR-based yeast recombineeringR01AI100272 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MADHANI, HITEN D · 2012 to 2025
$11.3M
Trehalose Pathway for Antifungal Targets and InhibitorsP01AI104533 · NIAID · DUKE UNIVERSITY · PI BRENNAN, RICHARD GERALD · 2015 to 2019
$9.0M
Structure, function, and evolution of the Cryptococcus MAT locusR01AI050113 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 2002 to 2024
$8.5M
ROLE OF CALCINEURIN IN C. NEOFORMANS MATING AND FRUITINGR01AI039115 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 1997 to 2025
$6.7M
Genetics of Cryptococcus sexual reproductionR37AI039115 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 2011 to 2020
$4.9M
CRYPTOCOCCAL GLYCAN SYNTHESISR01AI135012 · NIAID · WASHINGTON UNIVERSITY · PI DOERING, TAMARA L · 2018 to 2022
$2.5M
Structural Biological Development of Fungal-Specific Calcineurin InhibitorsR01AI112595 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH, SCHUMACHER, MARIA · 2014 to 2017
$2.5M
Structural Biological Development of Fungal-Specific Calcineurin InhibitorsR56AI112595 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH, HONG, JIYONG · 2020 to 2020
$669k
GLYCAN PRECURSOR TRANSPORT IN CRYPTOCOCCUS NEOFORMANSR21AI109623 · NIAID · WASHINGTON UNIVERSITY · PI DOERING, TAMARA L · 2014 to 2015
$419k
Role of glycan precursor transporters in Cryptococcus neoformans virulenceF30AI120339 · NIAID · WASHINGTON UNIVERSITY · PI LI, LUCY · 2016 to 2018
$128k
NIAID NIH HHS F30 AI120339NIAID NIH HHS P01 AI104533NIAID NIH HHS R01 AI039115NIAID NIH HHS R01 AI050113NIAID NIH HHS R01 AI100272NIAID NIH HHS R01 AI112595NIAID NIH HHS R01 AI135012NIAID NIH HHS R21 AI109623NIAID NIH HHS R37 AI039115NIAID NIH HHS R56 AI112595
6 · The paper itself

Abstract

Patients infected with the fungal pathogen Cryptococcus are most effectively treated with a combination of 5-fluorocytosine (5FC) and amphotericin B. 5FC acts as a prodrug, which is converted into toxic 5-fluorouracil (5FU) upon uptake into fungal cells. However, the pathogen frequently develops resistance through unclear mechanisms. Here we show that resistance to 5FC in Cryptococcus deuterogattii is acquired more frequently in isolates with defects in DNA mismatch repair that confer an elevated mutation rate. We use whole genome sequencing of 16 independent isolates to identify mutations associated with 5FC resistance in vitro. We find mutations in known resistance genes (FUR1 and FCY2) and in a gene UXS1, previously shown to encode an enzyme that converts UDP-glucuronic acid to UDP-xylose for capsule biosynthesis, but not known to play a role in 5FC metabolism. Mutations in UXS1 lead to accumulation of UDP-glucuronic acid and alterations in nucleotide metabolism, which appear to suppress toxicity of both 5FC and its toxic derivative 5FU.

Indexed as

Drug Resistance, FungalAmphotericin BAntifungal AgentsCryptococcusFlucytosineFungal ProteinsHumansMicrobial Sensitivity TestsMutationPolysaccharidesAmphotericin BAntifungal AgentsFlucytosineFungal ProteinsPolysaccharides

Identifiers

PMID31913284
PMCPMC6949227
OpenAlexW3000052441

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.