Evidence map›Paper›PMID 31912452›Full record

ArticleJournal of applied genetics2020

Genome-wide association analysis of stripe rust resistance loci in wheat accessions from southwestern China.

Bin Cheng, Xu Gao, Ning Cao, Yanqing Ding, Yu Gao, Tianqing Chen, Zhihai Xin, Liyi Zhang

Open access · hybridAbstract read
In one paragraph

Article in Journal of applied genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 43 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Bin ChengInsititute of Upland Crops, Guizhou Academy of Agricultural Sciences, Guiyang, 550006, Guizhou, China.
Xu GaoInsititute of Upland Crops, Guizhou Academy of Agricultural Sciences, Guiyang, 550006, Guizhou, China.
Ning CaoInsititute of Upland Crops, Guizhou Academy of Agricultural Sciences, Guiyang, 550006, Guizhou, China.
Yanqing DingInsititute of Upland Crops, Guizhou Academy of Agricultural Sciences, Guiyang, 550006, Guizhou, China.
Yu GaoCollege of Agriculture, Guizhou University, Guiyang, 550025, Guizhou, China.
Tianqing ChenInsititute of Upland Crops, Guizhou Academy of Agricultural Sciences, Guiyang, 550006, Guizhou, China.
Zhihai XinCollege of Life Sciences, Guizhou University, Guiyang, 550025, Guizhou, China.
Liyi ZhangInsititute of Upland Crops, Guizhou Academy of Agricultural Sciences, Guiyang, 550006, Guizhou, China. lyzhang1997@hotmail.com.
Guizhou Academy of Agricultural Sciences · CNGuizhou University · CN

Funding

Construction of Innovation Platform for Germplasm Resources of Upland Food Crops in Guizhou Province (QKZYD [2018]4003)National Natural Science Foundation of China (31660393)Natural Science Foundation of Guizhou Province ([2016]1147)Youth Science Foundation of Guizhou Academy of Agricultural Sciences ([2018]02)
6 · The paper itself

Abstract

Wheat stripe rust can cause considerable yield losses, and genetic resistance is the most effective approach for controlling the disease. To identify the genomic regions responsible for Puccinia striiformis f. sp. tritici (Pst) resistance in a set of winter wheat strains mainly from southwestern China, and to identify DNA markers in these regions, we carried out a genome-wide association study (GWAS) of 120 China winter wheat accessions using single nucleotide polymorphism (SNP) markers from 90K wheat SNP arrays. In total, 16 SNP loci were significantly associated with wheat stripe rust in field and greenhouse trials. Of these, three distinctive SNPs on chromosomes 1B, 4A, and 6A were identified at a site in Mianyang in 2014, where the most prevalent wheat stripe rust races since 2009 have been V26 (G22-9, G22-14). This suggests that the three SNP loci were linked to the new quantitative trait loci (QTL)/genes resistant to the V26 races. Germplasm with immunity to Pst is a good source of stripe rust resistance for breeding, and after further validation, SNPs closely linked to resistance QTLs/genes could be converted into user-friendly markers and facilitate marker-assisted selection to improve wheat stripe rust resistance.

Indexed as

Genome, PlantGenome-Wide Association StudyChinaDisease ResistanceGenes, PlantGenotypeLinkage DisequilibriumPlant DiseasesPolymorphism, Single NucleotideQuantitative Trait, HeritableQuantitative Trait LociTriticumIllumina 90K SNP arrayPopulation structureSouthwestern ChinaStripe rustYr genes

Identifiers

PMID31912452
PMCPMC6969011
OpenAlexW2999007365

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.