Evidence map›Paper›PMID 31912451›Full record

ArticleJournal of applied genetics2020

Development of a gene expression system for the uncommon actinomycete Actinoplanes rectilineatus NRRL B-16090.

Oleksandr Yushchuk, Vitalina Homoniuk, Yurij Datsiuk, Bohdan Ostash, Flavia Marinelli, Victor Fedorenko

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Article in Journal of applied genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Oleksandr YushchukDepartment of Genetics and Biotechnology, Ivan Franko National University of Lviv, 4 Hrushevskoho St, Lviv, 79005, Ukraine.
Vitalina HomoniukDepartment of Genetics and Biotechnology, Ivan Franko National University of Lviv, 4 Hrushevskoho St, Lviv, 79005, Ukraine.
Yurij DatsiukDepartment of Physics of Earth, Ivan Franko National University of Lviv, 4 Hrushevskoho st, Lviv, 79005, Ukraine.
Bohdan OstashDepartment of Genetics and Biotechnology, Ivan Franko National University of Lviv, 4 Hrushevskoho St, Lviv, 79005, Ukraine.
Flavia MarinelliDepartment of Biotechnology and Life Sciences, University of Insubria, via J.H. Dunant 3, 21100, Varese, Italy.
Victor FedorenkoDepartment of Genetics and Biotechnology, Ivan Franko National University of Lviv, 4 Hrushevskoho St, Lviv, 79005, Ukraine. viktor.fedorenko@lnu.edu.ua.ORCID http://orcid.org/0000-0003-3296-8297
Lviv University · UAUniversity of Insubria · IT

Funding

Ministry of Education and Science of Ukraine Bg-46F
6 · The paper itself

Abstract

The urgent need for discovering new bioactive metabolites prompts exploring novel actinobacterial taxa by developing appropriate tools for their genome mining and rational genetic engineering. One promising source of new bioactive natural products is the genus Actinoplanes, a home to filamentous sporangia-forming actinobacteria producing many important specialized metabolites such as teicoplanin, ramoplanin, and acarbose. Here we describe the development of a gene expression system for a new Actinoplanes species, A. rectilineatus (NRRL B-16090), which is a potential producer of moenomycin-like antibiotics. We have determined the optimal conditions for spore formation in A. rectilineatus and a plasmid transfer procedure for its engineering via intergeneric E. coli-A. rectilineatus conjugation. The φC31- and pSG5-based vectors were successfully transferred into A. rectilineatus, but φBT1- and VWB-based vectors were not transferable. Finally, using the glucuronidase reporter system, we assessed the strength of several heterologous promoters for gene expression in A. rectilineatus.

Indexed as

Gene ExpressionActinoplanesGene Expression RegulationGenetic EngineeringGenetic VectorsPlasmidsPromoter Regions, GeneticSpores, BacterialActinoplanesGlucuronidase assayIntergeneric conjugationPromoter activitySporangia

Identifiers

PMID31912451
OpenAlexW2997015753

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.