Evidence map›Paper›PMID 31912283›Full record

ArticleVirus genes2020

Whole-genome sequencing and comparative transcriptome analysis of Bombyx mori nucleopolyhedrovirus La strain.

Shota Fujimoto, Munetaka Kawamoto, Keisuke Shoji, Yutaka Suzuki, Susumu Katsuma, Masashi Iwanaga

Abstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Complete genome sequence of theMicrobiology resource announcements · 2025
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  4. Complete genome sequence of a nucleopolyhedrovirus isolated fromMicrobiology resource announcements · 2024
    Article
  5. Article
  6. Genomic Sequence Analysis ofIndian journal of microbiology · 2021
    Article
  7. Article
  8. High-QualityFrontiers in genetics · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Shota FujimotoDepartment of Agrobiology and Bioresources, School of Agriculture, Utsunomiya University, Mine-machi 350, Utsunomiya-shi, Tochigi, 321-8505, Japan.
Munetaka KawamotoDepartment of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan.
Keisuke ShojiDepartment of Agrobiology and Bioresources, School of Agriculture, Utsunomiya University, Mine-machi 350, Utsunomiya-shi, Tochigi, 321-8505, Japan.
Yutaka SuzukiDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, 277-8568, Japan.
Susumu KatsumaDepartment of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan.ORCID http://orcid.org/0000-0001-7096-3038
Masashi IwanagaDepartment of Agrobiology and Bioresources, School of Agriculture, Utsunomiya University, Mine-machi 350, Utsunomiya-shi, Tochigi, 321-8505, Japan. iwanaga@cc.utsunomiya-u.ac.jp.ORCID http://orcid.org/0000-0002-6223-9063
The University of Tokyo · JPUtsunomiya University · JP

Funding

Japan Science and Technology Agency AS262Z01406NJapan Society for the Promotion of Science 16H05051Japan Society for the Promotion of Science 19H02966Japan Society for the Promotion of Science 19J13817Japan Society for the Promotion of Science 221S0002Japan Society for the Promotion of Science 25292196Utsunomiya University Venture Business Laboratory Program FUtsunomiya University Young Innovation Scholarship
6 · The paper itself

Abstract

The Bombyx mori nucleopolyhedrovirus (BmNPV) La is a variant BmNPV strain isolated in Laos. La has different features from BmNPV type strain T3 in virulence, production of the polyhedrin protein, and the formation of multicapsid occlusion-derived viruses. Here, the whole-genome sequence of La was compared to the sequences of nine BmNPV and two Bombyx mandarina nucleopolyhedrovirus strains. The complete La genome consisted of 127,618 base pairs with a G + C content of 40.3% and contained putative 136 open reading frames encoding more than 60 amino acids. The La genome lacked the bro-b gene and had the highest identity with that of the T3 strain. A comparison of the transcriptomes of La- and T3-infected cells showed that the expression levels of the polyhedrin and cathepsin genes were greater in cells infected with La as compared to those infected with T3. Interestingly, the virus genes with different RNA levels between the two BmNPV strains were assembled into five clusters in the genome of La. Also, the RNA levels of host ribosomal protein genes were significantly decreased in cells infected with La as compared to those infected with T3.

Indexed as

AnimalsBase CompositionBombyxDNA, ViralGenome, ViralNucleopolyhedrovirusesOpen Reading FramesTranscriptomeWhole Genome SequencingDNA, ViralBaculovirusBmNPVBombyx mori nucleopolyhedrovirusTranscriptome analysisWhole-genome sequencing

Identifiers

PMID31912283
OpenAlexW2999990109

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.