Evidence map›Paper›PMID 31911630›Full record

ArticleNature communications2020

Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution.

Paul D Piehowski, Ying Zhu, Lisa M Bramer, Kelly G Stratton, Rui Zhao, Daniel J Orton, Ronald J Moore, Jia Yuan, Hugh D Mitchell, Yuqian Gao and 4 more

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 116 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
116citing papers in PubMed, 1 pooled it
19.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

116 citing papers in PubMed, 1 synthesis or guideline pooled it, 255 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Integrating Spatial Proteogenomics in Cancer Research.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  11. Spatial Proteomics Using S4P.Bio-protocol · 2026
    Article
  12. Review
  13. MALDI spatial proteomics: a mini review of approaches and techniques.Analytical methods : advancing methods and applications · 2026
    Review
  14. Review
  15. Spatial proteomics: technical evolution and applications in cancer research.Frontiers in cell and developmental biology · 2026
    Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article

56 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Paul D PiehowskiBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID http://orcid.org/0000-0001-5108-2227
Ying ZhuThe Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID http://orcid.org/0000-0002-5416-0566
Lisa M BramerNational Security Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.
Kelly G StrattonNational Security Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.
Rui ZhaoBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Daniel J OrtonBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID http://orcid.org/0000-0002-0253-6859
Ronald J MooreBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Jia YuanCincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0002-4807-8646
Hugh D MitchellBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Yuqian GaoBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID http://orcid.org/0000-0003-1646-4515
Bobbie-Jo M Webb-RobertsonNational Security Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.
Sudhansu K DeyCincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0001-9159-186X
Ryan T KellyThe Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA. ryan.kelly@byu.edu.
Kristin E Burnum-JohnsonBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA. kristin.burnum-johnson@pnnl.gov.ORCID http://orcid.org/0000-0002-2722-4149
Pacific Northwest National Laboratory · USCincinnati Children's Hospital Medical Center · USBrigham Young University · US

Funding

Molecular signaling in uterine receptivity to implantationR01HD068524 · NICHD · CINCINNATI CHILDRENS HOSP MED CTR · PI Xiaofei Sun · 2011 to 2026
$5.3M
Endocannabinoid Signaling During Early PregnancyR37DA006668 · NIDA · VANDERBILT UNIVERSITY · PI DEY, SUDHANSU K · 2003 to 2012
$3.8M
MARIJUANA EFFECTS ON EARLY PREGNANCYR01DA006668 · NIDA · UNIVERSITY OF KANSAS MEDICAL CENTER · PI DEY, SUDHANSU K · 1990 to 2019
$2.1M
Area A: In-Depth Proteome Mapping of the Tumor Microenvironment with Single-Cell ResolutionR33CA225248 · NCI · BRIGHAM YOUNG UNIVERSITY · PI KELLY, RYAN T · 2017 to 2017
$1.7M
Novel Platform for Quantitative Subcellular Resolution Imaging of Human Tissues Using Mass SpectrometryUH3CA255132 · NCI · PURDUE UNIVERSITY · PI LASKIN, JULIA · 2020 to 2021
$1.3M
Novel Platform for Quantitative Subcellular Resolution Imaging of Human Tissues Using Mass SpectrometryUG3HL145593 · NHLBI · PURDUE UNIVERSITY · PI LASKIN, JULIA · 2018 to 2019
$750k
Pan-omic characterization of the molecular determinants of uterine receptivityR21HD084788 · NICHD · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI BURNUM-JOHNSON, KRISTIN · 2016 to 2017
$509k
NCI NIH HHS R33 CA225248NCI NIH HHS UH3 CA255132NHLBI NIH HHS UG3 HL145593NICHD NIH HHS R01 HD068524NICHD NIH HHS R21 HD084788NIDA NIH HHS R01 DA006668NIDA NIH HHS R37 DA006668
6 · The paper itself

Abstract

Biological tissues exhibit complex spatial heterogeneity that directs the functions of multicellular organisms. Quantifying protein expression is essential for elucidating processes within complex biological assemblies. Imaging mass spectrometry (IMS) is a powerful emerging tool for mapping the spatial distribution of metabolites and lipids across tissue surfaces, but technical challenges have limited the application of IMS to the analysis of proteomes. Methods for probing the spatial distribution of the proteome have generally relied on the use of labels and/or antibodies, which limits multiplexing and requires a priori knowledge of protein targets. Past efforts to make spatially resolved proteome measurements across tissues have had limited spatial resolution and proteome coverage and have relied on manual workflows. Here, we demonstrate an automated approach to imaging that utilizes label-free nanoproteomics to analyze tissue voxels, generating quantitative cell-type-specific images for >2000 proteins with 100-µm spatial resolution across mouse uterine tissue sections preparing for blastocyst implantation.

Indexed as

AnimalsAutomationFemaleLaser Capture MicrodissectionMass SpectrometryMiceMice, Inbred C57BLMicrotomyProteinsProteomeProteomicsUterusProteinsProteome

Identifiers

PMID31911630
PMCPMC6946663
OpenAlexW2999277022

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.