Evidence map›Paper›PMID 31911594›Full record

ArticleNature communications2020

Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics.

Cheng Gao, Liliam Montoya, Ling Xu, Mary Madera, Joy Hollingsworth, Elizabeth Purdom, Vasanth Singan, John Vogel, Robert B Hutmacher, Jeffery A Dahlberg and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 117 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
117citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

117 citing papers in PubMed, 1 synthesis or guideline pooled it.

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57 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Cheng GaoDepartment of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0003-2522-7909
Liliam MontoyaDepartment of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0002-9311-9398
Ling XuDepartment of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0001-7974-3541
Mary MaderaDepartment of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA.
Joy HollingsworthUniversity of California Kearney Agricultural Research & Extension Center, Parlier, CA, 93648, USA.
Elizabeth PurdomStatistics Department, University of California, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0001-9455-7990
Vasanth SinganDepartment of Energy Joint Genome Institute, 1 Cyclotron Rd., Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0002-9983-5707
John VogelDepartment of Energy Joint Genome Institute, 1 Cyclotron Rd., Berkeley, CA, 94720, USA.
Robert B HutmacherUniversity of California West Side Research & Extension Center, UC Davis Department of Plant Sciences, Five Points, CA, 93624, USA.
Jeffery A DahlbergUniversity of California Kearney Agricultural Research & Extension Center, Parlier, CA, 93648, USA.
Devin Coleman-DerrDepartment of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA.
Peggy G LemauxDepartment of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0002-2842-4724
John W TaylorDepartment of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA. jtaylor@berkeley.edu.ORCID http://orcid.org/0000-0002-5794-7700

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Community assembly of crop-associated fungi is thought to be strongly influenced by deterministic selection exerted by the plant host, rather than stochastic processes. Here we use a simple, sorghum system with abundant sampling to show that stochastic forces (drift or stochastic dispersal) act on fungal community assembly in leaves and roots early in host development and when sorghum is drought stressed, conditions when mycobiomes are small. Unexpectedly, we find no signal for stochasticity when drought stress is relieved, likely due to renewed selection by the host. In our experimental system, the host compartment exerts the strongest effects on mycobiome assembly, followed by the timing of plant development and lastly by plant genotype. Using a dissimilarity-overlap approach, we find a universality in the forces of community assembly of the mycobiomes of the different sorghum compartments and in functional guilds of fungi.

Indexed as

MycobiomeBiodiversityDroughtsEcosystemFungiSoil MicrobiologySorghum

Identifiers

PMID31911594
PMCPMC6946711

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.