Evidence map›Paper›PMID 31911551›Full record

ArticleCancer research2020

Nudix Hydrolase NUDT16 Regulates 53BP1 Protein by Reversing 53BP1 ADP-Ribosylation.

Fan Zhang, Lihong Lou, Bo Peng, Xiaotian Song, Ofer Reizes, Alexandru Almasan, Zihua Gong

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Cancer research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 36 citations in OpenAlex.

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  16. The Role of Protein Arginine Methyltransferases in DNA Damage Response.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Fan Zhang *Department of Cancer Biology, Cleveland Clinic Lerner Research Institute, Cleveland, Ohio.
Lihong Lou *Department of Cancer Biology, Cleveland Clinic Lerner Research Institute, Cleveland, Ohio.
Bo PengDepartment of Cancer Biology, Cleveland Clinic Lerner Research Institute, Cleveland, Ohio.
Xiaotian SongDepartment of Cancer Biology, Cleveland Clinic Lerner Research Institute, Cleveland, Ohio.
Ofer ReizesDepartment of Cardiovascular & Metabolic Sciences, Cleveland Clinic Lerner Research Institute, Cleveland, Ohio.ORCID 0000-0003-0075-6871
Alexandru AlmasanDepartment of Cancer Biology, Cleveland Clinic Lerner Research Institute, Cleveland, Ohio.ORCID 0000-0002-8916-6650
Zihua GongDepartment of Cancer Biology, Cleveland Clinic Lerner Research Institute, Cleveland, Ohio. gongz@ccf.org.
Cleveland Clinic Lerner College of Medicine · US

Funding

The role of NUDT16 in DNA damage response and tumorigenesisR01CA222195 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI Zihua Gong · 2019 to 2026
$3.8M
Therapeutic resistance in leukemic cells: targeting BCL-2 family and autophagyR01CA184137 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI ALMASAN, ALEXANDRU · 2015 to 2019
$1.8M
NCI NIH HHS R01 CA184137NCI NIH HHS R01 CA222195
6 · The paper itself

Abstract

53BP1 controls two downstream subpathways, one mediated by PTIP and Artemis and the other by RIF1 and MAD2L2/Shieldin, to coordinate DNA repair pathway choices. However, the upstream regulator(s) of 53BP1 function in DNA repair remain unknown. We and others recently reported that TIRR associates with 53BP1 to stabilize it and prevents 53BP1 localization to DNA damage sites by blocking 53BP1 Tudor domain binding to H4K20me2 sites. Here, we report that the Nudix hydrolase NUDT16, a TIRR homolog, regulates 53BP1 stability. We identified a novel posttranslational modification of 53BP1 by ADP-ribosylation that is targeted by a PAR-binding E3 ubiquitin ligase, RNF146, leading to 53BP1 polyubiquitination and degradation. In response to DNA damage, ADP-ribosylated 53BP1 increased significantly, resulting in its ubiquitination and degradation. These data suggest that NUDT16 plays a major role in controlling 53BP1 levels under both normal growth conditions and during DNA damage. Notably, overexpression of a NUDT16 catalytically inactive mutant blocked 53BP1 localization to double-strand breaks because (i) the mutant binding to TIRR increased after IR; (ii) the mutant enhanced 53BP1 Tudor domain binding to TIRR, and (iii) the mutant impaired the interaction of 53BP1 Tudor domain with H4K20me2. Moreover, NUDT16's catalytic hydrolase activity was required for 53BP1 de-ADP-ribosylation, 53BP1 protein stability, and its function in cell survival. In summary, we demonstrate that NUDT16 regulates 53BP1 stability and 53BP1 recruitment at double-strand breaks, providing yet another mechanism of 53BP1 regulation.

Indexed as

ADP-RibosylationDNA Breaks, Double-StrandedDNA RepairCell LineCell Line, TumorHEK293 CellsHistonesHumansMutationProtein BindingProtein StabilityPyrophosphatasesTumor Suppressor p53-Binding Protein 1Ubiquitin-Protein LigasesHistonesNudt16 protein, humanPyrophosphatasesRNF146 protein, humanTP53BP1 protein, humanTumor Suppressor p53-Binding Protein 1Ubiquitin-Protein Ligases

Identifiers

PMID31911551
PMCPMC7056578
OpenAlexW3000396756

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.