Evidence map›Paper›PMID 31910894›Full record

ArticleClinical epigenetics2020

Frameshift mutations at the C-terminus of HIST1H1E result in a specific DNA hypomethylation signature.

Andrea Ciolfi, Erfan Aref-Eshghi, Simone Pizzi, Lucia Pedace, Evelina Miele, Jennifer Kerkhof, Elisabetta Flex, Simone Martinelli, Francesca Clementina Radio, Claudia A L Ruivenkamp and 9 more

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Expanding Upon Genomics in Rare Diseases: Epigenomic Insights.International journal of molecular sciences · 2024
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. HIST1H1E syndrome with deficiency in multiple pituitary hormones.Clinical pediatric endocrinology : case reports and clinical investigations : official journal of the Japanese Society for Pediatric Endocrinology · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Clinical Utility of a Unique Genome-Wide DNA Methylation Signature forInternational journal of molecular sciences · 2022
    Article
  18. Article
  19. Reprogramming of the epigenome in neurodevelopmental disorders.Critical reviews in biochemistry and molecular biology · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 5 countries.

Andrea CiolfiGenetics and Rare Diseases Research Division, Ospedale Pediatrico Bambino Gesù, IRCCS, 00146, Rome, Italy.
Erfan Aref-EshghiDepartment of Pathology and Laboratory Medicine, Western University, London, N6A 5C1, Canada.
Simone PizziGenetics and Rare Diseases Research Division, Ospedale Pediatrico Bambino Gesù, IRCCS, 00146, Rome, Italy.
Lucia PedaceDepartment of Pediatric Onco-Hematology and Cell and Gene Therapy, Ospedale Pediatrico Bambino Gesù, IRCCS, 00146, Rome, Italy.
Evelina MieleDepartment of Pediatric Onco-Hematology and Cell and Gene Therapy, Ospedale Pediatrico Bambino Gesù, IRCCS, 00146, Rome, Italy.
Jennifer KerkhofDepartment of Pathology and Laboratory Medicine, Western University, London, N6A 5C1, Canada.
Elisabetta FlexDepartment of Oncology and Molecular Medicine, Istituto Superiore di Sanità, 00161, Rome, Italy.
Simone MartinelliDepartment of Oncology and Molecular Medicine, Istituto Superiore di Sanità, 00161, Rome, Italy.
Francesca Clementina RadioGenetics and Rare Diseases Research Division, Ospedale Pediatrico Bambino Gesù, IRCCS, 00146, Rome, Italy.
Claudia A L RuivenkampDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, 2300, The Netherlands.
Gijs W E SantenDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, 2300, The Netherlands.
Emilia BijlsmaDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, 2300, The Netherlands.
Daniela Barge-SchaapveldDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, 2300, The Netherlands.
Katrin OunapDepartment of Clinical Genetics, United Laboratories, Tartu University Hospital, 50406, Tartu, Estonia.
Victoria Mok SiuMedical Genetics Program of Southwestern Ontario, London Health Sciences Centre, London, ON, N6A 5W9, Canada.
R Frank KooyDepartment of Medical Genetics, University of Antwerp, 2650, Antwerp, Belgium.
Bruno DallapiccolaGenetics and Rare Diseases Research Division, Ospedale Pediatrico Bambino Gesù, IRCCS, 00146, Rome, Italy.
Bekim SadikovicDepartment of Pathology and Laboratory Medicine, Western University, London, N6A 5C1, Canada. bekim.sadikovic@lhsc.on.ca.
Marco TartagliaGenetics and Rare Diseases Research Division, Ospedale Pediatrico Bambino Gesù, IRCCS, 00146, Rome, Italy. marco.tartaglia@opbg.net.ORCID 0000-0001-7736-9672
Bambino Gesù Children's Hospital · ITLeiden University Medical Center · NLWestern University · CAIstituto Superiore di Sanità · ITLondon Health Sciences Centre · CATartu University Hospital · EEUniversity of Antwerp · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWe previously associated HIST1H1E mutations causing Rahman syndrome with a specific genome-wide methylation pattern.

resultsMethylome analysis from peripheral blood samples of six affected subjects led us to identify a specific hypomethylated profile. This "episignature" was enriched for genes involved in neuronal system development and function. A computational classifier yielded full sensitivity and specificity in detecting subjects with Rahman syndrome. Applying this model to a cohort of undiagnosed probands allowed us to reach diagnosis in one subject.

conclusionsWe demonstrate an epigenetic signature in subjects with Rahman syndrome that can be used to reach molecular diagnosis.

Indexed as

DNA MethylationFrameshift MutationBrainDevelopmental DisabilitiesEpigenesis, GeneticHistonesHumansIntellectual DisabilityNeuronsSignal TransductionSyndromeH1-4 protein, humanHistonesAccelerated agingChromatin remodelingDNA methylationEpisignatureHIST1H1EIntellectual disabilityRahman syndromeReplicative senescence

Identifiers

PMID31910894
PMCPMC6947958
OpenAlexW2998743225

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.