Evidence map›Paper›PMID 31910798›Full record

ArticleBMC microbiology2020

Nucleotide polymorphism assay for the identification of west African group Bacillus anthracis: a lineage lacking anthrose.

Diansy Zincke, Michael H Norris, Berzhan Kurmanov, Ted L Hadfield, Jason K Blackburn

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Diansy ZinckeSpatial Epidemiology & Ecology Research Laboratory, Department of Geography, University of Florida, Gainesville, FL, USA.
Michael H NorrisSpatial Epidemiology & Ecology Research Laboratory, Department of Geography, University of Florida, Gainesville, FL, USA.
Berzhan KurmanovSpatial Epidemiology & Ecology Research Laboratory, Department of Geography, University of Florida, Gainesville, FL, USA.
Ted L HadfieldSpatial Epidemiology & Ecology Research Laboratory, Department of Geography, University of Florida, Gainesville, FL, USA.
Jason K BlackburnSpatial Epidemiology & Ecology Research Laboratory, Department of Geography, University of Florida, Gainesville, FL, USA. jkblackburn@ufl.edu.ORCID 0000-0003-0928-4831
University of Florida · US

Funding

NIH HHS 1R01GM1176176
6 · The paper itself

Abstract

backgroundThe exosporium of the anthrax-causing Bacillus anthracis endospores display a tetrasaccharide composed of three rhamnose residues and an unusual sugar termed anthrose. Anthrose is a proposed potential target for immunotherapy and for specific detection of B. anthracis. Although originally thought to be ubiquitous in B. anthracis, previous work identified an anthrose negative strain from a West African lineage isolated from cattle that could represent a vaccine escape mutant. These strains carry genes required for expression of the anthrose operon but premature stop codons resulting from an 8-bp insertion in BAS3320 (an amino-transferase) and a C/T substitution at position 892 of the BAS3321 (a glycosyltransferase) gene prevent anthrose expression. Various other single nucleotide polymorphisms (SNPs) have been identified throughout the operon and could be the basis for detection of anthrose-deficient strains.

resultsIn this study, we evaluated rhAmp genotypic assays based on SNPs at positions 892 and 1352 of BAS3321 for detection and differentiation of anthrose negative (Ant

conclusionsScreening of a global panel of B. anthracis isolates showed anthrose-expressing alleles are prevalent worldwide whereas the anthrose-deficient phenotype is to date limited to West Africa. Our work also revealed a third, previously unreported anthrose genotype in which the operon is altogether missing from a Polish B. anthracis isolate.

Indexed as

Polymorphism, Single NucleotideAmino SugarsAnimalsBacillus anthracisBacterial ProteinsCattleDeoxyglucoseEvolution, MolecularGenotyping TechniquesGlycosyltransferasesMutagenesis, InsertionalOperon4,6-dideoxy-4-(3-hydroxy-3-methylbutanamido)-2-O-methylglucopyranoseAmino SugarsBacterial ProteinsDeoxyglucoseGlycosyltransferasesAnthraxAnthroseBacillus anthracisGenotypingSNPWest Africa

Identifiers

PMID31910798
PMCPMC6947953
OpenAlexW2999077030

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.