Evidence map›Paper›PMID 31910230›Full record

ArticlePloS one2020

Multiplex real-time PCR for the detection of Clavibacter michiganensis subsp. michiganensis, Pseudomonas syringae pv. tomato and pathogenic Xanthomonas species on tomato plants.

Eliška Peňázová, Miloň Dvořák, Lucia Ragasová, Tomáš Kiss, Jakub Pečenka, Jana Čechová, Aleš Eichmeier

Abstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Eliška PeňázováMendeleum-Department of Genetics, Faculty of Horticulture, Mendel University in Brno, Lednice, Czech Republic.ORCID 0000-0002-5433-8993
Miloň DvořákDepartment of Forest Protection and Wildlife Management, Faculty of Forestry and Wood Technology, Mendel University in Brno, Brno, Czech Republic.
Lucia RagasováDepartment of Vegetable Sciences, Faculty of Horticulture, Mendel University in Brno, Lednice, Czech Republic.
Tomáš KissMendeleum-Department of Genetics, Faculty of Horticulture, Mendel University in Brno, Lednice, Czech Republic.
Jakub PečenkaMendeleum-Department of Genetics, Faculty of Horticulture, Mendel University in Brno, Lednice, Czech Republic.
Jana ČechováMendeleum-Department of Genetics, Faculty of Horticulture, Mendel University in Brno, Lednice, Czech Republic.
Aleš EichmeierMendeleum-Department of Genetics, Faculty of Horticulture, Mendel University in Brno, Lednice, Czech Republic.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A multiplex real-time PCR method based on fluorescent TaqMan® probes was developed for the simultaneous detection of the tomato pathogenic bacteria Clavibacter michiganensis subsp. michiganensis, Pseudomonas syringae pv. tomato and bacterial spot-causing xanthomonads. The specificity of the multiplex assay was validated on 44 bacterial strains, including 32 target pathogen strains as well as closely related species and nontarget tomato pathogenic bacteria. The designed multiplex real-time PCR showed high sensitivity when positive amplification was observed for one pg of bacterial DNA in the cases of Clavibacter michiganensis subsp. michiganensis and Pseudomonas syringae pv. tomato bacteria and 100 pg for bacterial spot-causing xanthomonads. The reliability of the developed multiplex real-time PCR assay for in planta detection was verified by recognition of the target pathogens in 18 tomato plants artificially inoculated by each of the target bacteria and tomato samples from production greenhouses.

Indexed as

Real-Time Polymerase Chain ReactionActinobacteriaClavibacterEnvironment, ControlledPseudomonas syringaeSolanum lycopersicumXanthomonas

Identifiers

PMID31910230
PMCPMC6946519

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.