Evidence map›Paper›PMID 31909128›Full record

ArticleData in brief2020

Code and data on the processing of the pulsed-field gel electrophoresis images: A matlab script.

Ahmad Mohammadbeigi, Mohammad Rezaei, Naser Zohourian Sani, Nemat Soltani, Parviz Mohajeri

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Data in brief, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ahmad MohammadbeigiStudent Research Committee, Kermanshah University of Medical Sciences, Kermanshah, Iran.
Mohammad RezaeiSleep Disorders Research Center, Kermanshah University of Medical Sciences, Kermanshah, Iran.
Naser Zohourian SaniStudent Research Committee, Kermanshah University of Medical Sciences, Kermanshah, Iran.
Nemat SoltaniStudent Research Committee, Kermanshah University of Medical Sciences, Kermanshah, Iran.
Parviz MohajeriDepartment of Microbiology, School of Medicine, Kermanshah University of Medical Sciences, Kermanshah, Iran.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here a matlab script was presented for lane tracking and band detection on the pulsed field gel electrophoresis (PFGE) images. It can also be used as a software tool for automatic analysis of PFGE images. The data consist of several MATLAB codes which collectively have the task of lane tracking, band detecting and pattern recognition on the PFGE images. The lane tracking stage is semi-automatic and the band detection stage is fully automatic. Finally, the pattern of lanes that includes number of, location, width and light intensity level of bands was obtained.

Indexed as

Band detectionImage processingMatlab scriptPattern recognitionPulsed-field gel electrophoresis

Identifiers

PMID31909128
PMCPMC6940661

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.