Evidence map›Paper›PMID 31908654›Full record

ArticleMolecular cytogenetics2020

Microarray expression studies on bone marrow of patients with Shwachman-Diamond syndrome in relation to deletion of the long arm of chromosome 20, other chromosome anomalies or normal karyotype.

Abdul Waheed Khan, Antonella Minelli, Annalisa Frattini, Giuseppe Montalbano, Alessia Bogni, Marco Fabbri, Giovanni Porta, Francesco Acquati, Rita Maria Pinto, Elena Bergami and 10 more

Open access · goldAbstract read
In one paragraph

Article in Molecular cytogenetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 1 country.

Abdul Waheed Khan1Genetica Umana e Medica, Dipartimento di Medicina e Chirurgia, Università dell'Insubria, Via J. H. Dunant, 5, 21100 Varese, Italy.
Antonella Minelli2Genetica Medica, Fondazione IRCCS Policlinico S. Matteo and Università di Pavia, Pavia, Italy.
Annalisa Frattini1Genetica Umana e Medica, Dipartimento di Medicina e Chirurgia, Università dell'Insubria, Via J. H. Dunant, 5, 21100 Varese, Italy.
Giuseppe Montalbano1Genetica Umana e Medica, Dipartimento di Medicina e Chirurgia, Università dell'Insubria, Via J. H. Dunant, 5, 21100 Varese, Italy.
Alessia Bogni4European Commission, Joint Research Centre (JRC), Ispra, Italy.
Marco Fabbri5Haematopathology Division, European Institute of Oncology, Milano, Italy.
Giovanni Porta1Genetica Umana e Medica, Dipartimento di Medicina e Chirurgia, Università dell'Insubria, Via J. H. Dunant, 5, 21100 Varese, Italy.
Francesco Acquati6Department of Biotechnology and Life Sciences, Università dell'Insubria, Varese, Italy.
Rita Maria Pinto7Department of Pediatric Hematology and Oncology, IRCCS Ospedale Pediatrico Bambino Gesù, Università di Roma Sapienza, Roma, Italy.
Elena Bergami8Pediatric Hematology / Oncology, Fondazione IRCCS Policlinico S. Matteo, Pavia, Italy.
Rossella MuraSC Oncoematologia Pediatrica, Ospedale Pediatrico Microcitemico "Antonio Cao", Azienda Ospedaliera Brotzu, Cagliari, Italy.
Anna Pegoraro10Pediatric Hematology Oncology, Ospedale Donna Bambino, Azienda Ospedaliera Universitaria Integrata, Verona, Italy.
Simone Cesaro10Pediatric Hematology Oncology, Ospedale Donna Bambino, Azienda Ospedaliera Universitaria Integrata, Verona, Italy.
Marco Cipolli11Cystic Fibrosis Center, Azienda Ospedaliera Universitaria Integrata di Verona, Verona, Italy.
Marco Zecca8Pediatric Hematology / Oncology, Fondazione IRCCS Policlinico S. Matteo, Pavia, Italy.
Cesare Danesino2Genetica Medica, Fondazione IRCCS Policlinico S. Matteo and Università di Pavia, Pavia, Italy.
Franco Locatelli7Department of Pediatric Hematology and Oncology, IRCCS Ospedale Pediatrico Bambino Gesù, Università di Roma Sapienza, Roma, Italy.
Emanuela Maserati1Genetica Umana e Medica, Dipartimento di Medicina e Chirurgia, Università dell'Insubria, Via J. H. Dunant, 5, 21100 Varese, Italy.
Francesco Pasquali1Genetica Umana e Medica, Dipartimento di Medicina e Chirurgia, Università dell'Insubria, Via J. H. Dunant, 5, 21100 Varese, Italy.
Roberto Valli1Genetica Umana e Medica, Dipartimento di Medicina e Chirurgia, Università dell'Insubria, Via J. H. Dunant, 5, 21100 Varese, Italy.ORCID 0000-0002-3209-8917
University of Insubria · ITAzienda Ospedaliera Universitaria Integrata Verona · ITBambino Gesù Children's Hospital · ITPoliclinico San Matteo Fondazione · ITUniversity of Pavia · ITEuropean Institute of Oncology · ITJoint Research Centre · ITOspedale Microcitemico · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundClonal chromosome changes are often found in the bone marrow (BM) of patients with Shwachman-Diamond syndrome (SDS). The most frequent ones include an isochromosome of the long arm of chromosome 7, i (7)(q10), and an interstitial deletion of the long arm of chromosome 20, del (20)(q). These two imbalances are mechanisms of somatic genetic rescue. The literature offers few expression studies on SDS.

resultsWe report the expression analysis of bone marrow (BM) cells of patients with SDS in relation to normal karyotype or to the presence of clonal chromosome anomalies: del (20)(q) (five cases), i (7)(q10) (one case), and other anomalies (two cases). The study was performed using the microarray technique considering the whole transcriptome (WT) and three gene subsets selected as relevant in BM functions. The expression patterns of nine healthy controls and SDS patients with or without chromosome anomalies in the bone marrow showed clear differences.

conclusionsThere is a significant difference between gene expression in the BM of SDS patients and healthy subjects, both at the WT level and in the selected gene sets. The deletion del (20)(q), with the

Indexed as

Clonal chromosome anomalies in bone marrowEIF6 geneExpression analysisRisk of MDS/AMLShwachman-diamond syndromeSomatic genetic rescue

Identifiers

PMID31908654
PMCPMC6941278
OpenAlexW3003885679

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.