Evidence map›Paper›PMID 31908010›Full record

ArticleFASEB journal : official publication of the Federation of American Societies for Experimental Biology2020

Dynamic transcriptome, accessible genome, and PGR cistrome profiles in the human myometrium.

San-Pin Wu, Matthew L Anderson, Tianyuan Wang, Lecong Zhou, Olivia M Emery, Xilong Li, Francesco J DeMayo

Open access · bronzeAbstract read
In one paragraph

Article in FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Serum response factor is essential for endometrial function and prevention of inflammatory fibrosis.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  9. The hormonal control of parturition.Physiological reviews · 2024
    Review
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  17. Review
  18. Progesterone receptor isoform B regulates theProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

San-Pin WuReproductive & Developmental Biology Laboratory, National Institute of Environmental Health Sciences, Research Triangle Park, NC.
Matthew L AndersonDepartment of Obstetrics & Gynecology, University of South Florida Morsani College of Medicine and Moffitt Cancer Center, Tampa, FL.
Tianyuan WangIntegrative Bioinformatics Support Group, National Institute of Environmental Health Sciences, Research Triangle Park, NC.
Lecong ZhouIntegrative Bioinformatics Support Group, National Institute of Environmental Health Sciences, Research Triangle Park, NC.
Olivia M EmeryReproductive & Developmental Biology Laboratory, National Institute of Environmental Health Sciences, Research Triangle Park, NC.
Xilong LiDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX.
Francesco J DeMayoReproductive & Developmental Biology Laboratory, National Institute of Environmental Health Sciences, Research Triangle Park, NC.
National Institute of Environmental Health Sciences · USBaylor College of Medicine · USMoffitt Cancer Center · US

Funding

Environmental Signaling in Reproduction and PregnancyZIAES103311 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI DEMAYO, FRANCESCO · 2016 to 2025
$30.5M
Intramural NIH HHS ZIA ES103311
6 · The paper itself

Abstract

The myometrium undergoes structural and functional remodeling during pregnancy. We hypothesize that myometrial genomic elements alter correspondingly in preparation for parturition. Human myometrial tissues from nonpregnant (NP) and term pregnant (TP) human subjects were examined by RNAseq, ATACseq, and PGR ChIPseq assays to profile transcriptome, assessible genome, and PGR occupancy. NP and TP specimens exhibit 2890 differentially expressed genes, reflecting an increase of metabolic, inflammatory, and PDGF signaling, among others, in adaptation to pregnancy. At the epigenome level, patterns of accessible genome change between NP and TP myometrium, leading to the altered enrichment of binding motifs for hormone and muscle regulators such as the progesterone receptor (PGR), Krüppel-like factors, and MEF2A transcription factors. PGR genome occupancy exhibits a significant difference between the two stages of the myometrium, concomitant with distinct transcriptomic profiles including genes such as ENO1, LHDA, and PLCL1 in the glycolytic and calcium signaling pathways. Over-representation of SRF, MYOD, and STAT binding motifs in PGR occupying sites further suggests interactions between PGR and major muscle regulators for myometrial gene expression. In conclusion, changes in accessible genome and PGR occupancy are part of the myometrial remodeling process and may serve as mechanisms to formulate the state-specific transcriptome profiles.

Indexed as

Genome, HumanRNA-SeqTranscriptomeAdultFemaleHumansMuscle ProteinsMyometriumPregnancyPregnancy ProteinsMuscle ProteinsPregnancy Proteinsgenome accessibilityhuman myometrial tissuePGR cistrometranscriptome

Identifiers

PMID31908010
PMCPMC10189786
OpenAlexW2994772464

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.