Evidence map›Paper›PMID 31907626›Full record

ArticlePlanta2020

MicroRNA-mediated responses to colchicine treatment in barley.

Fang-Yao Sun, Lin Liu, Yi Yu, Xin-Ming Ruan, Cheng-Yu Wang, Qun-Wen Hu, De-Xiang Wu, Genlou Sun

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.9field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Fang-Yao SunCollege of Agronomy, Anhui Agricultural University, Hefei, 230036, Anhui, China.
Lin LiuCollege of Agronomy, Anhui Agricultural University, Hefei, 230036, Anhui, China.
Yi YuCollege of Agronomy, Anhui Agricultural University, Hefei, 230036, Anhui, China.
Xin-Ming RuanCollege of Agronomy, Anhui Agricultural University, Hefei, 230036, Anhui, China.
Cheng-Yu WangCollege of Agronomy, Anhui Agricultural University, Hefei, 230036, Anhui, China. wangchengyu@ahau.edu.cn.
Qun-Wen HuCollege of Agronomy, Anhui Agricultural University, Hefei, 230036, Anhui, China.
De-Xiang WuCollege of Agronomy, Anhui Agricultural University, Hefei, 230036, Anhui, China. dexiangwu198@ahau.edu.cn.
Genlou SunBiology Department, Saint Mary's University, Halifax, NS, B3H 3C3, Canada. genlou.sun@smu.ca.ORCID http://orcid.org/0000-0001-9144-6072
Anhui Agricultural University · CNSaint Mary's University · CA

Funding

National Key Research and Development Program of China 2017YFD0301304Natural Sciences and Engineering Research Council of Canada RGPIN-2018-05433the international Science and Technology Cooperation Projects of Anhui Province 1704e1002232
6 · The paper itself

Abstract

MAIN

conclusionIn Hordeum vulgare, nine differentially expressed novel miRNAs were induced by colchicine. Five novel miRNA in colchicine solution showed the opposite expression patterns as those in water. Colchicine is a commonly used agent for plant chromosome set doubling. MicroRNA-mediated responses to colchicine treatment in plants have not been characterized. Here, we characterized new microRNAs induced by colchicine treatment in Hordeum vulgare using high-throughput sequencing. Our results showed that 39 differentially expressed miRNAs were affected by water treatment, including 34 novel miRNAs and 5 known miRNAs; 42 miRNAs, including 37 novel miRNAs and 5 known miRNAs, were synergistically affected by colchicine and water, and 9 differentially expressed novel miRNAs were induced by colchicine. The novel_mir69, novel_mir57, novel_mir75, novel_mir38, and novel_mir56 in colchicine treatment showed the opposite expression patterns as those in water. By analyzing these 9 differentially expressed novel miRNAs and their targets, we found that novel_mir69, novel_mir56 and novel_mir25 co-target the genes involving the DNA repair pathway. Based on our results, microRNA-target regulation network under colchicine treatment was proposed, which involves actin, cell cycle regulation, cell wall synthesis, and the regulation of oxidative stress. Overall, the results demonstrated the critical role of microRNAs mediated responses to colchicine treatment in plants.

Indexed as

ColchicineGene Expression Regulation, PlantHordeumMicroRNAsRNA, PlantSequence Analysis, RNAColchicineMicroRNAsRNA, PlantAbiotic stressChromosome doublingColchicineDNA repair pathwayHordeum vulgare

Identifiers

PMID31907626
OpenAlexW3000088459

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.