Evidence map›Paper›PMID 31907454›Full record

ArticleNature structural & molecular biology2020

A bipartite structural organization defines the SERINC family of HIV-1 restriction factors.

Valerie E Pye, Annachiara Rosa, Cinzia Bertelli, Weston B Struwe, Sarah L Maslen, Robin Corey, Idlir Liko, Mark Hassall, Giada Mattiuzzo, Allison Ballandras-Colas and 7 more

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. SERINC5 counters retroviruses and non-retroviruses.Frontiers in cellular and infection microbiology · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. HIV-1 restriction by SERINC5.Medical microbiology and immunology · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 3 countries.

Valerie E PyeChromatin Structure and Mobile DNA Laboratory, Francis Crick Institute, London, UK.ORCID http://orcid.org/0000-0001-9616-2992
Annachiara Rosa *Chromatin Structure and Mobile DNA Laboratory, Francis Crick Institute, London, UK.
Cinzia Bertelli *Department of Cellular, Computational and Integrative Biology, University of Trento, Povo, Italy.
Weston B StruwePhysical and Theoretical Chemistry Laboratory, South Parks Road, Oxford, UK.
Sarah L MaslenBiological Mass Spectrometry and Proteomics Laboratory, MRC Laboratory of Molecular Biology, Cambridge, UK.
Robin CoreyDepartment of Biochemistry, University of Oxford, Oxford, UK.
Idlir LikoPhysical and Theoretical Chemistry Laboratory, South Parks Road, Oxford, UK.
Mark HassallNational Institute for Biological Standards and Control, Hertfordshire, UK.
Giada MattiuzzoNational Institute for Biological Standards and Control, Hertfordshire, UK.ORCID http://orcid.org/0000-0001-9475-1590
Allison Ballandras-ColasChromatin Structure and Mobile DNA Laboratory, Francis Crick Institute, London, UK.
Andrea NansStructural Biology Science Technology Platform, Francis Crick Institute, London, UK.ORCID http://orcid.org/0000-0002-3791-2447
Yasuhiro TakeuchiNational Institute for Biological Standards and Control, Hertfordshire, UK.
Phillip J StansfeldDepartment of Biochemistry, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-8800-7669
J Mark SkehelBiological Mass Spectrometry and Proteomics Laboratory, MRC Laboratory of Molecular Biology, Cambridge, UK.
Carol V RobinsonPhysical and Theoretical Chemistry Laboratory, South Parks Road, Oxford, UK.
Massimo PizzatoDepartment of Cellular, Computational and Integrative Biology, University of Trento, Povo, Italy. massimo.pizzato@unitn.it.ORCID http://orcid.org/0000-0002-9491-1483
Peter CherepanovChromatin Structure and Mobile DNA Laboratory, Francis Crick Institute, London, UK. peter.cherepanov@crick.ac.uk.ORCID http://orcid.org/0000-0002-0634-538X
The Francis Crick Institute · GBMRC Laboratory of Molecular Biology · GBNational Institute for Biological Standards and Control · GBUniversity of Trento · ITInstitute of Infection and Immunity · CAUniversity of Oxford · GBUniversity of Warwick · GB

Funding

Technology Development 2: MAS NMR and dynamic nuclear polarization for HIV-1 structural biologyP50AI150481 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GRONENBORN, ANGELA M. · 2019 to 2021
$14.1M
Medical Research Council FC001061Medical Research Council MR/S009213/1NIAID NIH HHS P50 AI150481Wellcome Trust 208361Wellcome Trust FC001061
6 · The paper itself

Abstract

The human integral membrane protein SERINC5 potently restricts HIV-1 infectivity and sensitizes the virus to antibody-mediated neutralization. Here, using cryo-EM, we determine the structures of human SERINC5 and its orthologue from Drosophila melanogaster at subnanometer and near-atomic resolution, respectively. The structures reveal a novel fold comprised of ten transmembrane helices organized into two subdomains and bisected by a long diagonal helix. A lipid binding groove and clusters of conserved residues highlight potential functional sites. A structure-based mutagenesis scan identified surface-exposed regions and the interface between the subdomains of SERINC5 as critical for HIV-1-restriction activity. The same regions are also important for viral sensitization to neutralizing antibodies, directly linking the antiviral activity of SERINC5 with remodeling of the HIV-1 envelope glycoprotein.

Indexed as

AnimalsDrosophila melanogasterDrosophila ProteinsHIV-1HIV InfectionsHumansMembrane ProteinsModels, MolecularProtein ConformationProtein DomainsProtein MultimerizationDrosophila ProteinsMembrane ProteinsSERINC5 protein, human

Identifiers

PMID31907454
PMCPMC6956856
OpenAlexW2997218855

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.