Evidence map›Paper›PMID 31907447›Full record

ArticleNature methods2020

Nanoscale subcellular architecture revealed by multicolor three-dimensional salvaged fluorescence imaging.

Yongdeng Zhang, Lena K Schroeder, Mark D Lessard, Phylicia Kidd, Jeeyun Chung, Yuanbin Song, Lorena Benedetti, Yiming Li, Jonas Ries, Jonathan B Grimm and 5 more

Abstract read
In one paragraph

Article in Nature methods, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Stay in touch with the endoplasmic reticulum.Science China. Life sciences · 2024
    Pooled it
  2. Article
  3. Electrochemical Dye Switching Assisted Spectral Demixing and 3D STORM Imaging.Angewandte Chemie (International ed. in English) · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
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  10. Simulating Multicolor Super-Resolution Imaging Using an RGB Camera.Computational and structural biotechnology journal · 2026
    Article
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  12. Review
  13. Review
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Yongdeng Zhang *Department of Cell Biology, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-4569-8137
Lena K Schroeder *Department of Cell Biology, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-2660-0904
Mark D LessardDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.
Phylicia KiddDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-0308-5065
Jeeyun ChungDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.
Yuanbin SongSection of Hematology, Department of Internal Medicine, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-5580-5998
Lorena BenedettiDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.
Yiming LiCell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0003-4109-3824
Jonas RiesCell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-6640-9250
Jonathan B GrimmJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Luke D LavisJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0002-0789-6343
Pietro De CamilliDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.
James E RothmanDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.
David BaddeleyDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.
Joerg BewersdorfDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA. joerg.bewersdorf@yale.edu.ORCID http://orcid.org/0000-0002-4085-7020

Funding

Yale Diabetes Research CenterP30DK045735 · NIDDK · YALE UNIVERSITY · PI Richard A Flavell · 1993 to 2026
$44.0M
MOLECULAR MECHANISMS IN SYNAPTIC VESICLE RECYCLINGR01NS036251 · NINDS · YALE UNIVERSITY · PI DE CAMILLI, PIETRO · 1997 to 2021
$4.7M
Enabling Nanoscale Dynamic Imaging of Vesicles and OrganellesR01GM118486 · NIGMS · YALE UNIVERSITY · PI BADDELEY, DAVID, BEWERSDORF, JOERG · 2016 to 2019
$3.4M
Molecular Mechanisms in Synaptic Vesicle RecyclingR37NS036251 · NINDS · YALE UNIVERSITY · PI DE CAMILLI, PIETRO · 2010 to 2016
$2.7M
NIDDK NIH HHS P30 DK045735NIGMS NIH HHS R01 GM118486NINDS NIH HHS R01 NS036251NINDS NIH HHS R37 NS036251Wellcome Trust 203285/Z/16/Z
6 · The paper itself

Abstract

Combining the molecular specificity of fluorescent probes with three-dimensional imaging at nanoscale resolution is critical for investigating the spatial organization and interactions of cellular organelles and protein complexes. We present a 4Pi single-molecule switching super-resolution microscope that enables ratiometric multicolor imaging of mammalian cells at 5-10-nm localization precision in three dimensions using 'salvaged fluorescence'. Imaging two or three fluorophores simultaneously, we show fluorescence images that resolve the highly convoluted Golgi apparatus and the close contacts between the endoplasmic reticulum and the plasma membrane, structures that have traditionally been the imaging realm of electron microscopy. The salvaged fluorescence approach is equally applicable in most single-objective microscopes.

Indexed as

Optical ImagingAnimalsHumansOrganellesSubcellular Fractions

Identifiers

PMID31907447
PMCPMC7028321

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.