Evidence map›Paper›PMID 31907318›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Activation by substoichiometric inhibition.

Melisa Merdanovic, Steven G Burston, Anna Laura Schmitz, Steffen Köcher, Stefan Knapp, Tim Clausen, Markus Kaiser, Robert Huber, Michael Ehrmann

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Molecular Tweezers Block the Functional Pore of a Protein Machine.Journal of the American Chemical Society · 2025
    Article
  4. Mechanism of allosteric activation in human mitochondrial ClpP protease.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. HtrAs are essential for the survival of the haloarchaeonApplied and environmental microbiology · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. An allosteric HTRA1-calpain 2 complex with restricted activation profile.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Computational Design of Novel Allosteric Inhibitors forMolecules (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Melisa MerdanovicCenter of Medical Biotechnology, Faculty of Biology, University Duisburg-Essen, 45117 Essen, Germany.
Steven G BurstonSchool of Biochemistry, University of Bristol, Biomedical Sciences Building, Bristol BS8 1TD, United Kingdom.ORCID 0000-0003-1848-1853
Anna Laura SchmitzCenter of Medical Biotechnology, Faculty of Biology, University Duisburg-Essen, 45117 Essen, Germany.
Steffen KöcherCenter of Medical Biotechnology, Faculty of Biology, University Duisburg-Essen, 45117 Essen, Germany.
Stefan KnappInstitute of Pharmaceutical Chemistry, Goethe-University Frankfurt, 60438 Frankfurt, Germany.ORCID 0000-0001-5995-6494
Tim ClausenResearch Institute of Molecular Pathology, 1030 Vienna, Austria.
Markus KaiserCenter of Medical Biotechnology, Faculty of Biology, University Duisburg-Essen, 45117 Essen, Germany.
Robert HuberCenter of Medical Biotechnology, Faculty of Biology, University Duisburg-Essen, 45117 Essen, Germany; huber@biochem.mpg.de michael.ehrmann@uni-due.de.
Michael EhrmannCenter of Medical Biotechnology, Faculty of Biology, University Duisburg-Essen, 45117 Essen, Germany; huber@biochem.mpg.de michael.ehrmann@uni-due.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Startling reports described the paradoxical triggering of the human mitogen-activated protein kinase pathway when a small-molecule inhibitor specifically inactivates the BRAF V600E protein kinase but not wt-BRAF. We performed a conceptual analysis of the general phenomenon "activation by inhibition" using bacterial and human HtrA proteases as models. Our data suggest a clear explanation that is based on the classic biochemical principles of allostery and cooperativity. Although substoichiometric occupancy of inhibitor binding sites results in partial inhibition, this effect is overrun by a concomitant activation of unliganded binding sites. Therefore, when an inhibitor of a cooperative enzyme does not reach saturating levels, a common scenario during drug administration, it may cause the contrary of the desired effect. The implications for drug development are discussed.

Indexed as

Allosteric SiteAllosteric RegulationAntineoplastic AgentsEscherichia coliHeat-Shock ProteinsHigh-Temperature Requirement A Serine Peptidase 1HumansPeriplasmic ProteinsProtease InhibitorsProtein BindingSerine EndopeptidasesAntineoplastic AgentsDegP proteaseHeat-Shock ProteinsHigh-Temperature Requirement A Serine Peptidase 1HTRA1 protein, humanPeriplasmic ProteinsProtease InhibitorsSerine EndopeptidasesallosterycooperativityHTRA1HtrA proteasesinhibitor

Identifiers

PMID31907318
PMCPMC6983408

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.