Evidence map›Paper›PMID 31906997›Full record

ArticleVirology journal2020

First report and genetic diversity of porcine bufavirus in China.

Yan-Kuo Sun, Yong-Jie Chen, Yu Cai, Di-Hua Zhu, Hao-Ming Pan, Ying-Fang Wei, Xiao-Liang Han, Chi-Hai Ji, Gang Lu, Heng Wang and 2 more

Abstract read
In one paragraph

Article in Virology journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yan-Kuo SunCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, Guangdong Province, China.
Yong-Jie ChenCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, Guangdong Province, China.
Yu CaiCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, Guangdong Province, China.
Di-Hua ZhuCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, Guangdong Province, China.
Hao-Ming PanCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, Guangdong Province, China.
Ying-Fang WeiCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, Guangdong Province, China.
Xiao-Liang HanCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, Guangdong Province, China.
Chi-Hai JiCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, Guangdong Province, China.
Gang LuCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, Guangdong Province, China.
Heng WangCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, Guangdong Province, China.
Chun-Quan MaDepartment of Animal Medicine, Foshan University, Foshan, Guangdong Province, China.
Gui-Hong ZhangCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, Guangdong Province, China. guihongzh@scau.edu.cn.

Funding

Modern Agro-Industry Technology Research System CARS-36National Natural Science Foundation of China 31872489the National Key Research and Development Program 2016YFD0500707
6 · The paper itself

Abstract

backgroundBufavirus is a newly discovered zoonotic virus reported in numerous mammals and humans. However, the epidemiological and genetic characteristics of porcine bufaviruses (PBuVs) in China remain unclear.

methodsTo detect PBuVs in China, 384 samples (92 fecal and 292 serum specimens) were collected from 2017 to 2018, covering six provinces in China, and were evaluated by nested PCR. Further, the positive samples from different provinces were selected to obtain the complete genome of Chinese PBuVs.

resultsThe prevalence rate of PBuV was 16.7% in Chinese domestic pigs in the Guangdong, Guangxi, Fujian, Jiangxi, Anhui, and Henan provinces. Additionally, the positive rate of fecal specimens was higher than that of the serum samples. Next, we sequenced nine near-complete genomes of Chinese field PBuV strains from different provinces. Homology and phylogenetic analyses indicated that Chinese PBuVs have high genetic variation (93.3-99.2%), showed higher nucleotide identity with an Austrian PBuV strain (KU867071.1), and developed into different branches within the same cluster.

conclusionTo our knowledge, this is the first report on PBuV in China, expanding the geographic boundaries of PBuV circulation. Our data demonstrate that PBuVs are widely distributed in the six Chinese provinces. Moreover, these Chinese PBuVs exhibit genetic variation and continuous evolution characteristics. Taken together, our findings provide a foundation for future studies on bufaviruses.

Indexed as

Genetic VariationAnimalsChinaFarmsFecesGenome, ViralParvoviridae InfectionsParvovirinaePhylogenyPrevalenceSus scrofaSwineSwine DiseasesChinaHomology analysisPhylogenetic analysisPorcine bufavirusPrevalence

Identifiers

PMID31906997
PMCPMC6945576

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.