Evidence map›Paper›PMID 31906953›Full record

ArticleMalaria journal2020

Genetic polymorphisms in malaria vaccine candidate Plasmodium falciparum reticulocyte-binding protein homologue-5 among populations in Lagos, Nigeria.

Olusola Ajibaye, Akinniyi A Osuntoki, Emmanuel O Balogun, Yetunde A Olukosi, Bamidele A Iwalokun, Kolapo M Oyebola, Kenji Hikosaka, Yoh-Ichi Watanabe, Godwin U Ebiloma, Kiyoshi Kita and 1 more

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In one paragraph

Article in Malaria journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

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  12. Malaria Genomics, Vaccine Development, and Microbiome.Pathogens (Basel, Switzerland) · 2023
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  20. Hotspots inInternational journal of molecular sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 4 countries.

Olusola AjibayeDepartment of Biochemistry & Nutrition, Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria. sajibaye@yahoo.com.ORCID http://orcid.org/0000-0002-3888-2366
Akinniyi A OsuntokiDepartment of Biochemistry, College of Medicine, University of Lagos, Idi-Araba, Lagos, Nigeria.
Emmanuel O BalogunDepartment of Biochemistry, Ahmadu Bello University, 2222, Zaria, Nigeria.
Yetunde A OlukosiDepartment of Biochemistry & Nutrition, Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria.
Bamidele A IwalokunDepartment of Biochemistry & Nutrition, Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria.
Kolapo M OyebolaDepartment of Biochemistry & Nutrition, Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria.
Kenji HikosakaDepartment of Infection and Host Defense, Graduate School of Medicine, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba, 260-8670, Japan.
Yoh-Ichi WatanabeDepartment of Biochemistry, Ahmadu Bello University, 2222, Zaria, Nigeria.
Godwin U EbilomaSchool of Health and Life Sciences, Teesside University, Middlesbrough, TS1 3BX, UK.
Kiyoshi KitaSchool of Tropical Medicine and Global Health, Nagasaki University, Nagasaki, 852-8523, Japan.
Alfred Amambua-NgwaMedical Research Council at the London School of Hygiene and Tropical Medicine, Atlantic Boulevard, Fajara, The Gambia.
University of Lagos · NGAhmadu Bello University · NGNigerian Institute of Medical Research · NGChiba University · JPMRC Unit the Gambia · GMNagasaki University · JPTeesside University · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVaccines are the most reliable alternative to elicit sterile immunity against malaria but their development has been hindered by polymorphisms and strain-specificity in previously studied antigens. New vaccine candidates are therefore urgently needed. Highly conserved Plasmodium falciparum reticulocyte-binding protein homologue-5 (PfRH5) has been identified as a potential candidate for anti-disease vaccine development. PfRH5 is essential for erythrocyte invasion by merozoites and crucial for parasite survival. However, there is paucity of data on the extent of genetic variations on PfRH5 in field isolates of Plasmodium falciparum. This study described genetic polymorphisms at the high affinity binding polypeptides (HABPs) 36718, 36727, 36728 of PfRH5 in Nigerian isolates of P. falciparum. This study tested the hypothesis that only specific conserved B and T cell epitopes on PfRH5 HABPs are crucial for vaccine development.

methodsOne hundred and ninety-five microscopically confirmed P. falciparum samples collected in a prospective cross-sectional study of three different populations in Lagos, Nigeria. Genetic diversity and haplotype construct of Pfrh5 gene were determined using bi-directional sequencing approach. Tajima's D and the ratio of nonsynonymous vs synonymous mutations were utilized to estimate the extent of balancing and directional selection in the pfrh5 gene.

resultsSequence analysis revealed three haplotypes of PfRH5 with negative Tajima's D and dN/dS value of - 1.717 and 0.011 ± 0.020, respectively. A single nucleotide polymorphism, SNP (G → A) at position 608 was observed, which resulted in a change of the amino acid cysteine at position 203 to tyrosine. Haplotype and nucleotide diversities were 0.318 ± 0.016 and 0.0046 ± 0.0001 while inter-population genetic differentiation ranged from 0.007 to 0.037. Five polypeptide variants were identified, the most frequent being KTKYH with a frequency of 51.3%. One B-cell epitope, 151 major histocompatibility complex (MHC) class II T-cell epitopes, four intrinsically unstructured regions (IURs) and six MHC class I T-cell epitopes were observed in the study. Phylogenetic analysis of the sequences showed clustering and evidence of evolutionary relationship with 3D7, PAS-2 and FCB-2 RH5 sequences.

conclusionsThis study has revealed low level of genetic polymorphisms in PfRH5 antigen with B- and T-cell epitopes in intrinsically unstructured regions along the PfRH5 gene in Lagos, Nigeria. A broader investigation is however required in other parts of the country to support the possible inclusion of PfRH5 in a cross-protective multi-component vaccine.

Indexed as

Polymorphism, Single NucleotideAntibodies, ProtozoanAntigens, ProtozoanCarrier ProteinsCross-Sectional StudiesEpitopes, B-LymphocyteEpitopes, T-LymphocyteErythrocytesGene FlowHaplotypesHistocompatibilityMalaria, FalciparumMalaria VaccinesMerozoitesNigeriaPhylogenyAntibodies, ProtozoanAntigens, ProtozoanCarrier ProteinsEpitopes, B-LymphocyteEpitopes, T-LymphocyteMalaria VaccinesRH5 protein, Plasmodium falciparumGene flowHaplotypesHistocompatibilityLinkagePolymorphismsReticulocyte-binding protein homologue-5Unstructured regions

Identifiers

PMID31906953
PMCPMC6945540
OpenAlexW2998885580

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.