Evidence map›Paper›PMID 31906858›Full record

ArticleBMC genomics2020

Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element.

Adam Kawalek, Karolina Kotecka, Magdalena Modrzejewska, Jan Gawor, Grazyna Jagura-Burdzy, Aneta Agnieszka Bartosik

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Adaptive evolution ofMicrobial genomics · 2026
    Article
  2. Article
  3. Article
  4. Robust ParB Binding to Half-International journal of molecular sciences · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. The Lrp/AsnC-Type Regulator PA2577 Controls the EamA-like Transporter GeneInternational journal of molecular sciences · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. The MarR-Type Regulator PA3458 Is Involved in Osmoadaptation Control inInternational journal of molecular sciences · 2021
    Article
  14. Microbiology (Reading, England) · 2021
    Article
  15. TnMicroorganisms · 2020
    Article
  16. Journal of medical microbiology · 2020
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Adam KawalekInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Department of Microbial Biochemistry, Warsaw, Poland. a.kawalek@ibb.waw.pl.
Karolina KoteckaInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Department of Microbial Biochemistry, Warsaw, Poland.
Magdalena ModrzejewskaInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Department of Microbial Biochemistry, Warsaw, Poland.
Jan GaworInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, DNA Sequencing and Oligonucleotide Synthesis Laboratory, Warsaw, Poland.
Grazyna Jagura-BurdzyInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Department of Microbial Biochemistry, Warsaw, Poland.
Aneta Agnieszka BartosikInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Department of Microbial Biochemistry, Warsaw, Poland. anetab2@ibb.waw.pl.ORCID http://orcid.org/0000-0002-2091-3101
Institute of Biochemistry and Biophysics, Polish Academy of Sciences · PL

Funding

National Science Centre, Poland 2013/11/B/NZ2/02555National Science Centre, Poland 2015/18/E/NZ2/00675
6 · The paper itself

Abstract

backgroundPseudomonas aeruginosa is a cause of nosocomial infections, especially in patients with cystic fibrosis and burn wounds. PAO1 strain and its derivatives are widely used to study the biology of this bacterium, however recent studies demonstrated differences in the genomes and phenotypes of derivatives from different laboratories.

resultsHere we report the genome sequence of P. aeruginosa PAO1161 laboratory strain, a leu-, Rif

conclusionsThe high-quality P. aeruginosa PAO1161 genome sequence provides a reference for further research including e.g. investigation of horizontal gene transfer or comparative genomics. The strain was found to carry ICEPae1161, a functional PAPI-1 family integrative conjugative element, containing loci conferring mercury resistance, in the past attributed to the FP2 plasmid of IncP-8 incompatibility group. This indicates that the only known member of IncP-8 is in fact an ICE.

Indexed as

Conjugation, GeneticDrug Resistance, MicrobialGene Transfer, HorizontalGenome, BacterialHumansMercuryMutationOperonPhenotypePlasmidsPolymorphism, Single NucleotidePseudomonas aeruginosaPseudomonas putidaSequence Analysis, DNASpecies SpecificityMercuryGenome sequenceIntegrative conjugative elementMercury resistancePseudomonas aeruginosa

Identifiers

PMID31906858
PMCPMC6945700
OpenAlexW3000039989

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.