Evidence map›Paper›PMID 31906131›Full record

ArticleInternational journal of molecular sciences2019

The Use of High-Throughput Transcriptomics to Identify Pathways with Therapeutic Significance in Podocytes.

Ashish K Solanki, Pankaj Srivastava, Bushra Rahman, Joshua H Lipschutz, Deepak Nihalani, Ehtesham Arif

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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  10. The Role ofNon-coding RNA · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ashish K SolankiDepartment of Medicine, Nephrology Division, Medical University of South Carolina, Charleston, SC 29425, USA.ORCID 0000-0002-5043-1699
Pankaj SrivastavaDepartment of Medicine, Nephrology Division, Medical University of South Carolina, Charleston, SC 29425, USA.
Bushra RahmanDepartment of Medicine, Nephrology Division, Medical University of South Carolina, Charleston, SC 29425, USA.
Joshua H LipschutzDepartment of Medicine, Nephrology Division, Medical University of South Carolina, Charleston, SC 29425, USA.
Deepak NihalaniDepartment of Medicine, Nephrology Division, Medical University of South Carolina, Charleston, SC 29425, USA.
Ehtesham ArifDepartment of Medicine, Nephrology Division, Medical University of South Carolina, Charleston, SC 29425, USA.
Medical University of South Carolina · US

Funding

Translational Science Laboratory Shared ResourceP30CA138313 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI John J Lemasters · 2009 to 2026
$42.7M
Myo1c Participates in Podocyte Junction Formation Through Interaction with Neph1R01DK087956 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI NIHALANI, DEEPAK · 2010 to 2018
$3.5M
Preclinical therapeutic validation of a novel therapeutic lead for treating glomerular diseases such as focal and segmental glomerulosclerosisR56DK116887 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI NIHALANI, DEEPAK, SCHNELLMANN, RICK G · 2018 to 2018
$100k
NCI NIH HHS P30 CA138313NIDDK NIH HHS R01 DK087956NIDDK NIH HHS R56 DK116887NIDDK NIH HHS RO1-2R01DK087956-06A1 and R56-DK116887-01A1
6 · The paper itself

Abstract

Podocytes have a unique structure that supports glomerular filtration function, and many glomerular diseases result in loss of this structure, leading to podocyte dysfunction and ESRD (end stage renal disease). These structural and functional changes involve a complex set of molecular and cellular mechanisms that remain poorly understood. To understand the molecular signature of podocyte injury, we performed transcriptome analysis of cultured human podocytes injured either with PAN (puromycin aminonucleoside) or doxorubicin/adriamycin (ADR). The pathway analysis through DE (differential expression) and gene-enrichment analysis of the injured podocytes showed Tumor protein p53 (P53) as one of the major signaling pathways that was significantly upregulated upon podocyte injury. Accordingly, P53 expression was also up-regulated in the glomeruli of nephrotoxic serum (NTS) and ADR-injured mice. To further confirm these observations, cultured podocytes were treated with the P53 inhibitor pifithrin-α, which showed significant protection from ADR-induced actin cytoskeleton damage. In conclusion, signaling pathways that are involved in podocyte pathogenesis and can be therapeutically targeted were identified by high-throughput transcriptomic analysis of injured podocytes.

Indexed as

AnimalsDoxorubicinGene Expression RegulationHumansKidney DiseasesMicePhosphorylationPodocytesPuromycin AminonucleosideSignal TransductionTranscriptomeDoxorubicinPuromycin AminonucleosideP53 signalingpodocytesRNA sequencing

Identifiers

PMID31906131
PMCPMC6981397
OpenAlexW2996894047

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.