Evidence map›Paper›PMID 31902705›Full record

ArticleStem cell reports2020

Transdifferentiation of Mouse Embryonic Fibroblasts into Dopaminergic Neurons Reactivates LINE-1 Repetitive Elements.

Francesco Della Valle, Manjula P Thimma, Massimiliano Caiazzo, Salvatore Pulcrano, Mirko Celii, Sabir A Adroub, Peng Liu, Gregorio Alanis-Lobato, Vania Broccoli, Valerio Orlando

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

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  5. TDP-43 Epigenetic Facets and Their Neurodegenerative Implications.International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 4 countries.

Francesco Della ValleKing Abdullah University of Science and Technology (KAUST), Biological Environmental Science and Engineering Division, KAUST Environmental Epigenetics Program, Bld 2, Level 3, Room 3234, 4700 King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia.
Manjula P ThimmaKing Abdullah University of Science and Technology (KAUST), Biological Environmental Science and Engineering Division, KAUST Environmental Epigenetics Program, Bld 2, Level 3, Room 3234, 4700 King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia.
Massimiliano CaiazzoDepartment of Pharmaceutics, Utrecht Institute for Pharmaceutical Sciences (UIPS), 3584 Utrecht, the Netherlands; Institute of Genetics and Biophysics, "A. Buzzati-Traverso", C.N.R., 80131 Naples, Italy; Division of Neuroscience, San Raffaele Scientific Institute, 20132 Milan, Italy.
Salvatore PulcranoInstitute of Genetics and Biophysics, "A. Buzzati-Traverso", C.N.R., 80131 Naples, Italy.
Mirko CeliiKing Abdullah University of Science and Technology (KAUST), Biological Environmental Science and Engineering Division, KAUST Environmental Epigenetics Program, Bld 2, Level 3, Room 3234, 4700 King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia.
Sabir A AdroubKing Abdullah University of Science and Technology (KAUST), Biological Environmental Science and Engineering Division, KAUST Environmental Epigenetics Program, Bld 2, Level 3, Room 3234, 4700 King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia.
Peng LiuKing Abdullah University of Science and Technology (KAUST), Biological Environmental Science and Engineering Division, KAUST Environmental Epigenetics Program, Bld 2, Level 3, Room 3234, 4700 King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia.
Gregorio Alanis-LobatoKing Abdullah University of Science and Technology (KAUST), Biological Environmental Science and Engineering Division, KAUST Environmental Epigenetics Program, Bld 2, Level 3, Room 3234, 4700 King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia; Institute of Molecular Biology, Computational Biology and Data Mining Unit, 55128 Mainz, Germany.
Vania BroccoliDivision of Neuroscience, San Raffaele Scientific Institute, 20132 Milan, Italy.
Valerio OrlandoKing Abdullah University of Science and Technology (KAUST), Biological Environmental Science and Engineering Division, KAUST Environmental Epigenetics Program, Bld 2, Level 3, Room 3234, 4700 King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia. Electronic address: valerio.orlando@kaust.edu.sa.
King Abdullah University of Science and Technology · SASan Raffaele University of Rome · ITInstitute of Genetics and Biophysics · ITInstitute of Molecular Biology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In mammals, LINE-1 (L1) retrotransposons constitute between 15% and 20% of the genome. Although only a few copies have retained the ability to retrotranspose, evidence in brain and differentiating pluripotent cells indicates that L1 retrotransposition occurs and creates mosaics in normal somatic tissues. The function of de novo insertions remains to be understood. The transdifferentiation of mouse embryonic fibroblasts to dopaminergic neuronal fate provides a suitable model for studying L1 dynamics in a defined genomic and unaltered epigenomic background. We found that L1 elements are specifically re-expressed and mobilized during the initial stages of reprogramming and that their insertions into specific acceptor loci coincides with higher chromatin accessibility and creation of new transcribed units. Those events accompany the maturation of neuronal committed cells. We conclude that L1 retrotransposition is a non-random process correlating with chromatin opening and lncRNA production that accompanies direct somatic cell reprogramming.

Indexed as

Long Interspersed Nucleotide ElementsAnimalsBiomarkersCell Culture TechniquesCell LineCell TransdifferentiationComputational BiologyDopaminergic NeuronsFibroblastsFluorescent Antibody TechniqueGene Expression ProfilingGene Expression Regulation, DevelopmentalGenomeMiceRetroelementsWhole Genome SequencingBiomarkersRetroelementscell plasticitycell transdifferentiationLINE-1 elements

Identifiers

PMID31902705
PMCPMC6962658
OpenAlexW2997395188

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.