Evidence map›Paper›PMID 31902070›Full record

ArticleBiomolecular NMR assignments2020

Libo Li, Stephanie O Palmer, Elizabeth A Gomez, Frank Mendiola, Tianzhi Wang, James M Bullard, Yonghong Zhang

Open access · greenAbstract read
In one paragraph

Article in Biomolecular NMR assignments, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 100% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Libo LiDepartment of Chemistry, The University of Texas Rio Grande Valley, Edinburg, TX, 78539, USA.
Stephanie O PalmerDepartment of Chemistry, The University of Texas Rio Grande Valley, Edinburg, TX, 78539, USA.
Elizabeth A GomezDepartment of Chemistry, The University of Texas Rio Grande Valley, Edinburg, TX, 78539, USA.
Frank MendiolaDepartment of Chemistry, The University of Texas Rio Grande Valley, Edinburg, TX, 78539, USA.
Tianzhi WangDepartment of Biochemistry and Molecular Biology, Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, Galveston, TX, 77555, USA.
James M BullardDepartment of Chemistry, The University of Texas Rio Grande Valley, Edinburg, TX, 78539, USA.
Yonghong ZhangDepartment of Chemistry, The University of Texas Rio Grande Valley, Edinburg, TX, 78539, USA. yonghong.zhang@utrgv.edu.ORCID http://orcid.org/0000-0002-7305-9295
The University of Texas Rio Grande Valley · USHarbin University of Science and Technology · CNThe University of Texas Medical Branch at Galveston · US

Funding

Construction of a Protein Synthesis System from Pseudomonas aeruginosa for Screening for Antibacterial CandidatesSC3GM098173 · NIGMS · UNIVERSITY OF TEXAS RIO GRANDE VALLEY · PI BULLARD, JAMES M · 2012 to 2019
$861k
NIGMS NIH HHS SC3 GM098173
6 · The paper itself

Abstract

Translation initiation factor 3 (IF3) is one of the three protein factors that bind to the small ribosomal subunit and it is required for the initiation of protein biosynthesis in bacteria. IF3 contains two independent domains, N- and C-terminal domains, which are connected by a lysine-rich interdomain linker. IF3 undergoes large-scale movements and conformational changes upon binding to the 30S subunit and also during the functional regulation of initiation. However, the precise dynamic interplay of the two domains and the molecular mechanism of IF3 is not well understood. A high-resolution 3D structure of a complete IF3 in bacteria has not been solved. Pseudomonas aeruginosa, a gram-negative opportunistic pathogen, is a primary cause of nosocomial infections in humans. Here we report the NMR chemical shift assignments of IF3 from P. aeruginosa as the first step toward NMR structure determination and interaction studies. Secondary structure analyses deduced from the NMR chemical shift data identified nine β-strands and four α-helices arranged in the sequential order β1-β2-α1-β3-β4-α2-β5-α3-β6-α4-β7-β8-β9.

Indexed as

Carbon-13 Magnetic Resonance SpectroscopyNuclear Magnetic Resonance, BiomolecularProton Magnetic Resonance SpectroscopyNitrogen IsotopesProkaryotic Initiation Factor-3Protein Structure, SecondaryPseudomonas aeruginosaNitrogen-15Nitrogen IsotopesProkaryotic Initiation Factor-3NMR assignmentsProtein secondary structurePseudomonas aeruginosaTranslation initiation factor 3 (IF3)

Identifiers

PMID31902070
PMCPMC7073282
OpenAlexW2997241980

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.