Evidence map›Paper›PMID 31901520›Full record

ArticleCell host & microbe2020

A Ribose-Scavenging System Confers Colonization Fitness on the Human Gut Symbiont Bacteroides thetaiotaomicron in a Diet-Specific Manner.

Robert W P Glowacki, Nicholas A Pudlo, Yunus Tuncil, Ana S Luis, Peter Sajjakulnukit, Anton I Terekhov, Costas A Lyssiotis, Bruce R Hamaker, Eric C Martens

Open access · bronzeAbstract read
In one paragraph

Article in Cell host & microbe, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
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  8. Identification and characterization of the functional LolB ortholog inbioRxiv : the preprint server for biology · 2026
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  10. Article
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  13. DNA-utilization loci enable exogenous DNA metabolism in gut Bacteroidales.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Article
  15. EmergingmSystems · 2025
    Article
  16. Article
  17. Article
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  19. EmergingbioRxiv : the preprint server for biology · 2024
    Article
  20. Acarbose Impairs GutbioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Robert W P GlowackiDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Nicholas A PudloDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Yunus TuncilDepartment of Food Science and Whistler Center for Carbohydrate Research, Purdue University, West Lafayette, IN 47907, USA.
Ana S LuisDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Peter SajjakulnukitDepartment of Molecular and Integrative Physiology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Anton I TerekhovDepartment of Food Science and Whistler Center for Carbohydrate Research, Purdue University, West Lafayette, IN 47907, USA.
Costas A LyssiotisDepartment of Molecular and Integrative Physiology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Bruce R HamakerDepartment of Food Science and Whistler Center for Carbohydrate Research, Purdue University, West Lafayette, IN 47907, USA.
Eric C MartensDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA. Electronic address: emartens@umich.edu.
University of Michigan–Ann Arbor · USPurdue University West Lafayette · US

Funding

Statistics and Bioinformatics Core - WangU24DK097153 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BURANT, CHARLES F · 2012 to 2017
$10.1M
Molecular Mechanisms of Microbial Pathogenesis Training ProgramT32AI007528 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CARRUTHERS, VERNON BRUCE · 1998 to 2024
$6.8M
Defining a nutrient niche competed for by gut commensal bacteria and pathogensR21AI128120 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARTENS, ERIC C · 2017 to 2018
$417k
NIAID NIH HHS R21 AI128120NIAID NIH HHS T32 AI007528NIDDK NIH HHS U24 DK097153
6 · The paper itself

Abstract

Efficient nutrient acquisition in the human gut is essential for microbial persistence. Although polysaccharides have been well-studied nutrients for the gut microbiome, other resources such as nucleic acids and nucleosides are less studied. We describe several ribose-utilization systems (RUSs) that are broadly represented in Bacteroidetes and appear to have diversified to access ribose from a variety of substrates. One Bacteroides thetaiotaomicron RUS variant is critical for competitive gut colonization in a diet-specific fashion. We used molecular genetics to probe the required functions of the system and the nature of the nutrient source(s) underlying this phenotype. Two RUS-encoded ribokinases were the only components required for this effect, presumably because they generate ribose-phosphate derivatives from products of an unlinked but essential nucleoside phosphorylase. Our results underscore the extensive mechanisms that gut symbionts have evolved to access nutrients and the potential for unexpected dependencies among systems that mediate colonization and persistence.

Indexed as

Bacteroides thetaiotaomicronAnimalsDietGastrointestinal MicrobiomeGene Expression Regulation, BacterialGenes, BacterialMicePentosyltransferasesPhosphotransferases (Alcohol Group Acceptor)RiboseSymbiosisnucleoside phosphorylasePentosyltransferasesPhosphotransferases (Alcohol Group Acceptor)ribokinaseRiboseBacteroidesmicrobiomemicrobiotanucleosideribokinaseribosesymbiont

Identifiers

PMID31901520
PMCPMC7031954
OpenAlexW2997278264

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.