Evidence map›Paper›PMID 31901448›Full record

ArticleMolecular cell2020

The SUMO Ligase Su(var)2-10 Controls Hetero- and Euchromatic Gene Expression via Establishing H3K9 Trimethylation and Negative Feedback Regulation.

Maria Ninova, Baira Godneeva, Yung-Chia Ariel Chen, Yicheng Luo, Sharan J Prakash, Ferenc Jankovics, Miklós Erdélyi, Alexei A Aravin, Katalin Fejes Tóth

Open access · greenAbstract read
In one paragraph

Article in Molecular cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 60 citations in OpenAlex.

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  12. H3K14ac facilitates the reinstallation of constitutive heterochromatin inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. piRNA associates with immune diseases.Cell communication and signaling : CCS · 2024
    Review
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 3 countries.

Maria NinovaDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Baira GodneevaDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA; Institute of Molecular Genetics, Russian Academy of Sciences, Moscow 123182, Russia.
Yung-Chia Ariel ChenDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Yicheng LuoDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Sharan J PrakashDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Ferenc JankovicsInstitute of Genetics, Biological Research Centre, Szeged 6726, Hungary.
Miklós ErdélyiInstitute of Genetics, Biological Research Centre, Szeged 6726, Hungary.
Alexei A AravinDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA. Electronic address: aaa@caltech.edu.
Katalin Fejes TóthDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA. Electronic address: kft@caltech.edu.
California Institute of Technology · USHUN-REN Szegedi Biológiai Kutatóközpont · HU

Funding

Molecular Mechanism of the piRNA BiogenesisR01GM097363 · NIGMS · CORNELL UNIVERSITY · PI ARAVIN, ALEXEI A. · 2011 to 2025
$4.0M
Understanding the mechanism of Piwi-induced transcriptional silencingR01GM110217 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI FEJES TOTH, KATALIN · 2014 to 2024
$3.1M
Elucidating the role of SUMO ligase Su(var)2-10 in piRNA-guided transcriptional silencing and repressive chromatin formationK99HD099316 · NICHD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI NINOVA, MARIA ANTONINOVA · 2019 to 2020
$259k
NICHD NIH HHS K99 HD099316NIGMS NIH HHS R01 GM097363NIGMS NIH HHS R01 GM110217
6 · The paper itself

Abstract

Сhromatin is critical for genome compaction and gene expression. On a coarse scale, the genome is divided into euchromatin, which harbors the majority of genes and is enriched in active chromatin marks, and heterochromatin, which is gene-poor but repeat-rich. The conserved molecular hallmark of heterochromatin is the H3K9me3 modification, which is associated with gene silencing. We found that in Drosophila, deposition of most of the H3K9me3 mark depends on SUMO and the SUMO ligase Su(var)2-10, which recruits the histone methyltransferase complex SetDB1/Wde. In addition to repressing repeats, H3K9me3 influences expression of both hetero- and euchromatic host genes. High H3K9me3 levels in heterochromatin are required to suppress spurious transcription and ensure proper gene expression. In euchromatin, a set of conserved genes is repressed by Su(var)2-10/SetDB1-induced H3K9 trimethylation, ensuring tissue-specific gene expression. Several components of heterochromatin are themselves repressed by this pathway, providing a negative feedback mechanism to ensure chromatin homeostasis.

Indexed as

AnimalsChromosomal Proteins, Non-HistoneDNA MethylationDrosophila melanogasterDrosophila ProteinsEuchromatinFeedback, PhysiologicalGene ExpressionGene Expression RegulationGene SilencingHeterochromatinHistone-Lysine N-MethyltransferaseHistonesLigasesMethyltransferasesProtein Inhibitors of Activated STATChromosomal Proteins, Non-HistoneDrosophila Proteinsegg protein, DrosophilaEuchromatinHeterochromatinHistone-Lysine N-MethyltransferaseHistonesLigasesMethyltransferasesProtein Inhibitors of Activated STATRepressor ProteinsSmall Ubiquitin-Related Modifier ProteinsSu(var)2-10 protein, DrosophilaWde protein, Drosophilacell fate maintenancechromatinepigeneticsgene regulationgermlineH3K9me3heterochromatinSUMOtranscriptional repressiontransposons

Identifiers

PMID31901448
PMCPMC7007874
OpenAlexW2998585555

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.