Evidence map›Paper›PMID 31900791›Full record

ArticlePhotosynthesis research2021

Photosynthetic characterization and expression profiles of sugarcane infected by Sugarcane mosaic virus (SCMV).

Sehrish Akbar, Wei Yao, Kai Yu, Lifang Qin, Miaohong Ruan, Charles A Powell, Baoshan Chen, Muqing Zhang

Abstract read
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In one paragraph

Article in Photosynthesis research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Genome-Wide Analysis and Expression Profiling of SoybeanInternational journal of molecular sciences · 2024
    Article
  6. Article
  7. Identification and characterization of theFrontiers in plant science · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Sehrish Akbar *State Key Laboratory for Conservation and Utilization of Agro Bioresources, Guangxi University, Nanning, 530005, China.
Wei Yao *Guangxi Key Laboratory for Sugarcane Biology, Guangxi University, Nanning, 530005, China.
Kai Yu *State Key Laboratory for Conservation and Utilization of Agro Bioresources, Guangxi University, Nanning, 530005, China.
Lifang QinState Key Laboratory for Conservation and Utilization of Agro Bioresources, Guangxi University, Nanning, 530005, China.
Miaohong RuanState Key Laboratory for Conservation and Utilization of Agro Bioresources, Guangxi University, Nanning, 530005, China.
Charles A PowellIRREC-IFAS, University of Florida, Fort Pierce, FL, 34945, USA.
Baoshan ChenState Key Laboratory for Conservation and Utilization of Agro Bioresources, Guangxi University, Nanning, 530005, China.
Muqing ZhangState Key Laboratory for Conservation and Utilization of Agro Bioresources, Guangxi University, Nanning, 530005, China. zmuqing@163.com.ORCID http://orcid.org/0000-0003-3138-3422
Guangxi University · CNUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sugarcane mosaic virus (SCMV), belonging to genus Potyvirus, family Potyviridae, is a severe pathogen of several agricultural important crops, mainly sugarcane. Due to complex nature of sugarcane, the effect of SCMV pathogenicity on sugarcane photosynthetic systems remains to be explored. In this study, we investigated the alterations occurring in the photosynthetic system in the sugarcane genotypes at the cytopathological, physiological and biological, transcriptome and proteome level. We generated the transcriptome assembly of two genotypes (susceptible Badila and resistant B-48) using Saccharum spontaneum L. as a reference genome. RNA-sequencing data revealed the significant upregulation of NAD(P)H, RubisCO, oxygen-evolving complex, chlorophyll a and b binding protein, Psb protein family, PSI reaction center subunit II, and IVgenes in B-48, as compared to its counterparts. Upregulated genes in B-48 are associated with various processes such as stability and assembly of photosystem, protection against photoinhibition and antiviral defense. The expression pattern of differentially abundant genes were further verified at the proteomics level. Overall, differentially expressed genes/proteins (DEGs/DEPs) showed the consistency of expression at both transcriptome and proteome level in B-48 genotype. Comprehensively, these data supported the efficiency of B-48 genotype under virus infection conditions and provided a better understanding of the expression pattern of photosynthesis-related genes in sugarcane.

Indexed as

PotyvirusSaccharumChlorophyll APhotosynthesisPlant DiseasesChlorophyll APhotosynthesisProteomeSugarcane mosaic virusTranscriptomeTransgenic

Identifiers

PMID31900791
OpenAlexW2997941765

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.