Evidence map›Paper›PMID 31900465›Full record

ReviewNature reviews. Gastroenterology & hepatology2020

Harnessing big 'omics' data and AI for drug discovery in hepatocellular carcinoma.

Bin Chen, Lana Garmire, Diego F Calvisi, Mei-Sze Chua, Robin K Kelley, Xin Chen

Erratum issued Registry-linked trialOpen access · greenAbstract readReview
In one paragraph

Review in Nature reviews. Gastroenterology & hepatology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. It is linked to trial NCT05543304 (Predicting Response to Systemic Therapies for Hepatocellular Carcinoma), which is not on this map. Cited by 85 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed, 1 pooled it
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05543304 unknown statusnot on this map

Predicting Response to Systemic Therapies for Hepatocellular Carcinoma(HCC) Based on Clinical Variables and Radiomics Data With Machine Learning Methods

TypeobservationalSponsorFirst Affiliated Hospital of Wenzhou Medical UniversityRan2018 to 2024Enrolled200ConditionsHepatocellular Carcinoma Non-resectable, Effect of DrugArmsradiological evaluation
3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 1 synthesis or guideline pooled it, 161 citations in OpenAlex.

  1. Pooled it
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  15. Cancer chemoprevention: signaling pathways and strategic approaches.Signal transduction and targeted therapy · 2025
    Review
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25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 3 countries.

Bin ChenDepartment of Pediatrics and Human Development, Department of Pharmacology and Toxicology, Michigan State University, Grand Rapids, MI, USA. bin.chen@hc.msu.edu.ORCID http://orcid.org/0000-0001-8858-874X
Lana GarmireDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.
Diego F CalvisiDepartment of Clinical and Experimental Medicine, University of Sassari, Sassari, Italy.
Mei-Sze ChuaDepartment of Surgery, Asian Liver Center, School of Medicine, Stanford University, Stanford, CA, USA.
Robin K KelleyDepartment of Medicine, University of California, San Francisco, CA, USA.
Xin ChenDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-9588-0164
University of California, San Francisco · USFerris State University · USStanford University · USUniversity of Michigan · USUniversity of Sassari · IT

Funding

Transgenic Mouse, ICSI and IVF CoreP20GM103457 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI URSCHITZ, JOHANN · 2012 to 2018
$12.9M
An Integrative Omics Approach to Identify Biomarkers Related to Preeclampsia and Breast Cancer RisksR01HD084633 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2016 to 2020
$3.0M
Cancer precision medicine through spatially informative single cell image and transcriptomics data analysisR01LM012373 · NLM · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2016 to 2024
$2.4M
DR. EPS: Drug Repurposing for Extended Patient SurvivalR01LM012907 · NLM · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2019 to 2022
$1.0M
An Integrative Bioinformatics Approach to Study Single Cancer Cell HeterogeneityK01ES025434 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2014 to 2018
$905k
Integrating transcriptomic, proteomic and pharmacogenomic data to inform individualized therapy in cancersK01ES028047 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHEN, BIN · 2017 to 2020
$682k
Targeting glucose metabolism for the treatment of Hepatocellular CarcinomaR21TR001743 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHEN, BIN · 2017 to 2018
$560k
NCATS NIH HHS R21 TR001743NICHD NIH HHS R01 HD084633NIEHS NIH HHS K01 ES025434NIEHS NIH HHS K01 ES028047NIGMS NIH HHS P20 GM103457NLM NIH HHS R01 LM012373NLM NIH HHS R01 LM012907
6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC) is the most common form of primary adult liver cancer. After nearly a decade with sorafenib as the only approved treatment, multiple new agents have demonstrated efficacy in clinical trials, including the targeted therapies regorafenib, lenvatinib and cabozantinib, the anti-angiogenic antibody ramucirumab, and the immune checkpoint inhibitors nivolumab and pembrolizumab. Although these agents offer new promise to patients with HCC, the optimal choice and sequence of therapies remains unknown and without established biomarkers, and many patients do not respond to treatment. The advances and the decreasing costs of molecular measurement technologies enable profiling of HCC molecular features (such as genome, transcriptome, proteome and metabolome) at different levels, including bulk tissues, animal models and single cells. The release of such data sets to the public enhances the ability to search for information from these legacy studies and provides the opportunity to leverage them to understand HCC mechanisms, rationally develop new therapeutics and identify candidate biomarkers of treatment response. Here, we provide a comprehensive review of public data sets related to HCC and discuss how emerging artificial intelligence methods can be applied to identify new targets and drugs as well as to guide therapeutic choices for improved HCC treatment.

Indexed as

Artificial IntelligenceAnimalsAntineoplastic AgentsBiomarkersCarcinoma, HepatocellularCell Line, TumorDisease Models, AnimalDrug DiscoveryGenomicsHumansLiver NeoplasmsMachine LearningMolecular Targeted TherapyPrecision MedicineTranslational Research, BiomedicalAntineoplastic AgentsBiomarkers

Identifiers

PMID31900465
PMCPMC7401304
OpenAlexW2997782431

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.