Evidence map›Paper›PMID 31900453›Full record

ArticleNature ecology & evolution2020

Evolutionarily conserved pachytene piRNA loci are highly divergent among modern humans.

Deniz M Özata, Tianxiong Yu, Haiwei Mou, Ildar Gainetdinov, Cansu Colpan, Katharine Cecchini, Yasin Kaymaz, Pei-Hsuan Wu, Kaili Fan, Alper Kucukural and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Nature ecology & evolution, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
14.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 116 citations in OpenAlex.

  1. The pachytene-specific lncRNANon-coding RNA research · 2026
    Article
  2. Article
  3. Spatiotemporal control of PIWI compartmentalization by mitochondrial scaffolds defines pachytene piRNA pathway organization.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. TEITbase: a database for transposable element (TE)-initiated transcripts in human cancers.Database : the journal of biological databases and curation · 2026
    Article
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  12. Review
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  15. Article
  16. Review
  17. Article
  18. PIWI proteins and piRNAs: key regulators of stem cell biology.Frontiers in cell and developmental biology · 2025
    Review
  19. Review
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Deniz M Özata *RNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, USA.ORCID http://orcid.org/0000-0001-5215-8684
Tianxiong Yu *Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.
Haiwei MouRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, USA.
Ildar GainetdinovRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, USA.ORCID http://orcid.org/0000-0003-1719-043X
Cansu ColpanRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, USA.
Katharine CecchiniRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, USA.
Yasin KaymazProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.
Pei-Hsuan WuRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, USA.
Kaili FanProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.
Alper KucukuralProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.ORCID http://orcid.org/0000-0001-9983-394X
Zhiping WengProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA. zhiping.weng@umassmed.edu.ORCID http://orcid.org/0000-0002-3032-7966
Phillip D ZamoreRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, USA. phillip.zamore@umassmed.edu.ORCID http://orcid.org/0000-0002-4505-9618
University of Massachusetts Chan Medical School · USHoward Hughes Medical Institute · USTongji University · CN

Funding

University of Massachusetts Center for Clinical Science and Translational SupplementUL1TR001453 · NCATS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LUZURIAGA, KATHERINE F · 2015 to 2024
$39.0M
Understanding the architecture, regulation, and function of piRNA-producing genesP01HD078253 · NICHD · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WENG, ZHIPING · 2015 to 2019
$6.5M
Understanding the Mechanism of RNA InterferenceR37GM062862 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZAMORE, PHILLIP D · 2010 to 2019
$5.3M
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR001453NICHD NIH HHS P01 HD078253NIGMS NIH HHS R37 GM062862
6 · The paper itself

Abstract

In the fetal mouse testis, PIWI-interacting RNAs (piRNAs) guide PIWI proteins to silence transposons but, after birth, most post-pubertal pachytene piRNAs map to the genome uniquely and are thought to regulate genes required for male fertility. In the human male, the developmental classes, precise genomic origins and transcriptional regulation of postnatal piRNAs remain undefined. Here, we demarcate the genes and transcripts that produce postnatal piRNAs in human juvenile and adult testes. As in the mouse, human A-MYB drives transcription of both pachytene piRNA precursor transcripts and messenger RNAs encoding piRNA biogenesis factors. Although human piRNA genes are syntenic to those in other placental mammals, their sequences are poorly conserved. In fact, pachytene piRNA loci are rapidly diverging even among modern humans. Our findings suggest that, during mammalian evolution, pachytene piRNA genes are under few selective constraints. We speculate that pachytene piRNA diversity may provide a hitherto unrecognized driver of reproductive isolation.

Indexed as

GenomeTestisAdolescentAnimalsFemaleGene Expression RegulationHumansMaleMicePregnancyRNA, MessengerRNA, Small InterferingRNA, MessengerRNA, Small Interfering

Identifiers

PMID31900453
PMCPMC6961462
OpenAlexW2995845102

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.