Evidence map›Paper›PMID 31900413›Full record

ArticleNature communications2020

Epigenetics meets proteomics in an epigenome-wide association study with circulating blood plasma protein traits.

Shaza B Zaghlool, Brigitte Kühnel, Mohamed A Elhadad, Sara Kader, Anna Halama, Gaurav Thareja, Rudolf Engelke, Hina Sarwath, Eman K Al-Dous, Yasmin A Mohamoud and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 1 synthesis or guideline pooled it, 86 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 4 countries.

Shaza B ZaghloolDepartment of Physiology and Biophysics, Weill Cornell Medicine-Qatar, Doha, Qatar.ORCID http://orcid.org/0000-0002-9132-8030
Brigitte KühnelResearch Unit of Molecular Epidemiology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Bavaria, Germany.
Mohamed A ElhadadResearch Unit of Molecular Epidemiology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Bavaria, Germany.ORCID http://orcid.org/0000-0002-6758-8369
Sara KaderDepartment of Physiology and Biophysics, Weill Cornell Medicine-Qatar, Doha, Qatar.
Anna HalamaDepartment of Physiology and Biophysics, Weill Cornell Medicine-Qatar, Doha, Qatar.ORCID http://orcid.org/0000-0003-4910-6255
Gaurav TharejaDepartment of Physiology and Biophysics, Weill Cornell Medicine-Qatar, Doha, Qatar.ORCID http://orcid.org/0000-0003-2277-6400
Rudolf EngelkeProteomics Core, Weill Cornell Medicine-Qatar, Doha, Qatar.ORCID http://orcid.org/0000-0001-6773-0655
Hina SarwathProteomics Core, Weill Cornell Medicine-Qatar, Doha, Qatar.
Eman K Al-DousGenomics Core, Weill Cornell Medicine-Qatar, Doha, Qatar.
Yasmin A MohamoudGenomics Core, Weill Cornell Medicine-Qatar, Doha, Qatar.
Thomas MeitingerGerman Centre for Cardiovascular Research (DZHK), partner site Munich Heart Alliance, Munich, Germany.
Rory WilsonResearch Unit of Molecular Epidemiology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Bavaria, Germany.ORCID http://orcid.org/0000-0001-6135-3764
Konstantin StrauchInstitute of Genetic Epidemiology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany.
Annette PetersResearch Unit of Molecular Epidemiology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Bavaria, Germany.
Dennis O Mook-KanamoriDepartment of Clinical Epidemiology, Leiden University Medical Centre, Leiden, The Netherlands.
Johannes GraumannScientific Service Group Biomolecular Mass Spectrometry, Max Planck Institute for Heart and Lung Research, W.G. Kerckhoff Institute, Bad Nauheim, Germany.ORCID http://orcid.org/0000-0002-3015-5850
Joel A MalekGenomics Core, Weill Cornell Medicine-Qatar, Doha, Qatar.ORCID http://orcid.org/0000-0002-1516-8477
Christian GiegerResearch Unit of Molecular Epidemiology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Bavaria, Germany.
Melanie WaldenbergerResearch Unit of Molecular Epidemiology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Bavaria, Germany.ORCID http://orcid.org/0000-0003-0583-5093
Karsten SuhreDepartment of Physiology and Biophysics, Weill Cornell Medicine-Qatar, Doha, Qatar. kas2049@qatar-med.cornell.edu.ORCID http://orcid.org/0000-0001-9638-3912
Weill Cornell Medical College in Qatar · QAHelmholtz Zentrum München · DELeiden University Medical Center · NLMax Planck Institute for Heart and Lung Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA methylation and blood circulating proteins have been associated with many complex disorders, but the underlying disease-causing mechanisms often remain unclear. Here, we report an epigenome-wide association study of 1123 proteins from 944 participants of the KORA population study and replication in a multi-ethnic cohort of 344 individuals. We identify 98 CpG-protein associations (pQTMs) at a stringent Bonferroni level of significance. Overlapping associations with transcriptomics, metabolomics, and clinical endpoints suggest implication of processes related to chronic low-grade inflammation, including a network involving methylation of NLRC5, a regulator of the inflammasome, and associated pQTMs implicating key proteins of the immune system, such as CD48, CD163, CXCL10, CXCL11, LAG3, FCGR3B, and B2M. Our study links DNA methylation to disease endpoints via intermediate proteomics phenotypes and identifies correlative networks that may eventually be targeted in a personalized approach of chronic low-grade inflammation.

Indexed as

AdultAgedAged, 80 and overBlood ProteinsChemokine CXCL10Cohort StudiesCpG IslandsDNA MethylationEpigenomeEpigenomicsFemaleGermanyGPI-Linked ProteinsHumansInflammationIntracellular Signaling Peptides and ProteinsBlood ProteinsChemokine CXCL10FCGR3B protein, humanGPI-Linked ProteinsIntracellular Signaling Peptides and ProteinsNLRC5 protein, humanReceptors, IgG

Identifiers

PMID31900413
PMCPMC6941977
OpenAlexW2998283775

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.