Evidence map›Paper›PMID 31900106›Full record

ArticleBMC infectious diseases2020

Cysteine-cysteine chemokine receptor 5 (CCR5) profile of HIV-infected subjects attending University of Calabar Teaching Hospital, Calabar, Southern Nigeria.

Ekerette Friday Ekere, Monday F Useh, Henshaw Uchechi Okoroiwu, Tatfeng Youtchou Mirabeau

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

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  7. Assessment of blood supply and usage pre- and during COVID-19 pandemic: A lesson from non-voluntary donation.Transfusion clinique et biologique : journal de la Societe francaise de transfusion sanguine · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ekerette Friday EkereHematology Laboratory, University of Calabar Teaching Hospital, Calabar, Nigeria.
Monday F UsehMicrobiology Unit, Department of Medical Laboratory Science, University of Calabar, Calabar, Nigeria.
Henshaw Uchechi OkoroiwuHematology Unit, Department of Medical Laboratory Science, University of Calabar, Calabar, Nigeria. okoroiwuhenshaw@gmail.com.ORCID http://orcid.org/0000-0003-2658-3788
Tatfeng Youtchou MirabeauDepartment of Medical Laboratory Science, College of Health Sciences, Niger Delta University, Amassama, Nigeria.
University of Calabar · NGNiger Delta University · NG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCysteine-cysteine chemokine receptor 5 is the main HIV co-receptor involved in the virus and cell-to-cell spread. A variant of the CCR5 gene known as CCR5-Δ32 which is a product of 32 base pair deletion in the gene plays critical role in the infection and progression to AIDS. The study was carried out to determine the CCR5 genotype of HIV-infected subjects attending University of Calabar Teaching Hospital, Calabar.

methodsA total of 100 subjects attending HIV clinic, University of Calabar Teaching Hospital were purposively recruited for this study. DNA was extracted from each sample using the Quick gDNA miniprep DNA extraction kit, Zymo Research. Polymerase chain reaction (PCR) was used in the amplification of CCR5 gene in each DNA in a 9700 ABI Thermo cycler and then resolved on 4% agarose gel electrophoresis.

resultOut of the 100 samples assessed, 100 (100%) were homozygous for the CCR5 wild type gene (CCR5-wt), while none (0%) was homozygous for the CCR5-Δ32 (mutant type), and heterozygosity was not observed.

conclusionThis study observed absence of CCR5-Δ32 deletion gene among the studied subjects in Calabar, implying lack of genetic advantage in HIV infection and possible rapid progression towards AIDS if other precautions are not checked.

Indexed as

Cross-Sectional StudiesDisease ProgressionDNA Mutational AnalysisFemaleGene FrequencyGenotypeHeterozygoteHIV-1HIV InfectionsHospitals, TeachingHumansMaleNigeriaPhylogenyPolymerase Chain ReactionReceptors, CCR5CCR5 protein, humanReceptors, CCR5CCR5CCR5 genotypeCCR5-Δ32HIVMutant CCR5Wild type CCR5

Identifiers

PMID31900106
PMCPMC6942402
OpenAlexW3002865378

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.