Evidence map›Paper›PMID 31898506›Full record

ArticleBMC psychiatry2020

Abnormal expression of rno_circRNA_014900 and rno_circRNA_005442 induced by ketamine in the rat hippocampus.

Jing Mao, Tianmei Li, Di Fan, Hongli Zhou, Jianguo Feng, Li Liu, Chunxiang Zhang, Xiaobin Wang

Open access · goldAbstract read
In one paragraph

Article in BMC psychiatry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 2 pooled it
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 2 syntheses or guidelines pooled it, 122 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Jing MaoSchool of Clinical Medicine, the Affiliated Hospital of Southwest Medical University, Luzhou, Sichuan Province, People's Republic of China.
Tianmei LiSchool of Clinical Medicine, the Affiliated Hospital of Southwest Medical University, Luzhou, Sichuan Province, People's Republic of China.
Di FanSchool of Clinical Medicine, the Affiliated Hospital of Southwest Medical University, Luzhou, Sichuan Province, People's Republic of China.
Hongli ZhouSchool of Clinical Medicine, the Affiliated Hospital of Southwest Medical University, Luzhou, Sichuan Province, People's Republic of China.
Jianguo FengLaboratory of Anesthesiology, the Affiliated Hospital of Southwest Medical University, Luzhou, Sichuan Province, People's Republic of China.
Li LiuDepartment of Anesthesiology, the Affiliated Hospital of Southwest Medical University, No.25, Taiping Road, Luzhou, Sichuan Province, 646000, People's Republic of China.
Chunxiang ZhangDepartment of Biomedical Engineering, School of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Xiaobin WangDepartment of Anesthesiology, the Affiliated Hospital of Southwest Medical University, No.25, Taiping Road, Luzhou, Sichuan Province, 646000, People's Republic of China. wangxiaobin67@163.com.ORCID 0000-0003-1302-9104
Affiliated Hospital of Southwest Medical University · CNSouthwest Medical University · CNUniversity of Alabama at Birmingham · US

Funding

Department of Science &Technology of Sichuan Province 14JC0093the Projects of the National Natural Science Foundation of China 81271478
6 · The paper itself

Abstract

backgroundRecent studies have shown that circular RNA (circRNA) is rich in microRNA (miRNA) binding sites. We have previously demonstrated that the antidepressant effect of ketamine is related to the abnormal expression of various miRNAs in the brain. This study determined the expression profile of circRNAs in the hippocampus of rats treated with ketamine.

methodsThe aberrantly expressed circRNAs in rat hippocampus after ketamine injection were analyzed by microarray chip, and we further validated these circRNAs by quantitative reverse-transcription PCR (qRT-PCR). The target genes of the different circRNAs were predicted using bioinformatic analyses, and the functions and signal pathways of these target genes were investigated by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses.

resultsMicroarray analysis showed that five circRNAs were aberrantly expressed in rat hippocampus after ketamine injection (fold change > 2.0, p < 0.05). The results from the qRT-PCR showed that one of the circRNAs was significantly increased (rno_circRNA_014900; fold change = 2.37; p = 0.03), while one was significantly reduced (rno_circRNA_005442; fold change = 0.37; p = 0.01). We discovered a significant enrichment in several GO terms and pathways associated with depression.

conclusionOur findings showed the abnormal expression of ketamine-induced hippocampal circRNAs in rats.

Indexed as

AnimalsComputational BiologyExcitatory Amino Acid AntagonistsGene Expression ProfilingHippocampusKetamineMaleRatsRats, Sprague-DawleyReal-Time Polymerase Chain ReactionRNA, CircularSignal TransductionExcitatory Amino Acid AntagonistsKetamineRNA, CircularCircRNAHippocampusKetamineRat

Identifiers

PMID31898506
PMCPMC6939336
OpenAlexW3002516758

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.