Evidence map›Paper›PMID 31894468›Full record

ArticleVirus genes2020

Changes in the G

B E González-Pacheco, L Delaye, D Ochoa, R Rojas, L Silva-Rosales

Abstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Variation Profile of the Orthotospovirus Genome.Pathogens (Basel, Switzerland) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

B E González-PachecoDepto de Ing. Genética, Cinvestav Unidad Irapuato, Km. 9.6 Lib. Nte. Carr. Irapuato-León, 36821, Irapuato, Gto., Mexico.
L DelayeDepto de Ing. Genética, Cinvestav Unidad Irapuato, Km. 9.6 Lib. Nte. Carr. Irapuato-León, 36821, Irapuato, Gto., Mexico.
D OchoaInstituto de Fitosanidad, Colegio de Postgraduados, Carretera México-Texcoco, Km 36.5. Montecillos, Mpio. Texcoco, 56230, Edo. Mex., D.F., Mexico.
R RojasInstituto de Fitosanidad, Colegio de Postgraduados, Carretera México-Texcoco, Km 36.5. Montecillos, Mpio. Texcoco, 56230, Edo. Mex., D.F., Mexico.
L Silva-RosalesDepto de Ing. Genética, Cinvestav Unidad Irapuato, Km. 9.6 Lib. Nte. Carr. Irapuato-León, 36821, Irapuato, Gto., Mexico. laura.silvar@cinvestav.mx.ORCID http://orcid.org/0000-0001-6679-5131
Instituto Tecnológico Superior de Irapuato · MXColegio de Postgraduados · MX

Funding

Fideicomiso para la Investigación del Colegio de Postgraduados 167304SEP-CONACYT CB-2010-01 (No. 0157638)
6 · The paper itself

Abstract

We isolated and compared three tomato spotted wilt virus (TSWV) isolates from lettuce (TSWV-Let), pepper (TSWV-Pep), and tomato (TSWV-Tom) from central Mexico to determine their ability to infect a set of eighteen differential plant species from seven families. TWSV-Let was an aggressive isolate with the ability to infect up to 52% of the differential plants, including maize, under greenhouse conditions. The nucleotide (nt) sequences of the three isolates are more than 90% similar in the M and S RNA segments. In the M segment of the TSWV-Let isolate, we detected nt changes in their intergenic region (IGR) and, in the Gc gene, a region containing a recombination site, as well as a synapomorphy associated with one of three sites under positive selection with a change in one aa residue (a cysteine-to-valine mutation). We speculate on the association of these features in the Gc gene with host selection, adaptation, aggressiveness, and ability to infect maize plants.

Indexed as

PhylogenyGenome, ViralPlant DiseasesRecombination, GeneticRNA, ViralSolanum lycopersicumTospovirusRNA, ViralGcSynapomorphy and recombinationTSWV-LetTSWV maizeTWSV pepper and TSWV tomato

Identifiers

PMID31894468
OpenAlexW2997273675

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.