Evidence map›Paper›PMID 31893298›Full record

ArticleCurrent microbiology2020

Complete Genome Sequence of a Novel Polyhydroxyalkanoate (PHA) Producer, Jeongeupia sp. USM3 (JCM 19920) and Characterization of Its PHA Synthases.

Noor-Afiqah Ahmad Zain, Lee-Mei Ng, Choon Pin Foong, Yen Teng Tai, Jayaram Nanthini, Kumar Sudesh

Abstract read
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In one paragraph

Article in Current microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
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  5. EngineeringFrontiers in bioengineering and biotechnology · 2023
    Article
  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Noor-Afiqah Ahmad ZainSchool of Biological Sciences, Universiti Sains Malaysia, 11800, Penang, Malaysia.
Lee-Mei NgSchool of Biological Sciences, Universiti Sains Malaysia, 11800, Penang, Malaysia.
Choon Pin FoongSchool of Biological Sciences, Universiti Sains Malaysia, 11800, Penang, Malaysia.
Yen Teng TaiSchool of Biological Sciences, Universiti Sains Malaysia, 11800, Penang, Malaysia.
Jayaram NanthiniInternational University of Malaya-Wales, 50480, Kuala Lumpur, Malaysia.
Kumar SudeshSchool of Biological Sciences, Universiti Sains Malaysia, 11800, Penang, Malaysia. ksudesh@usm.my.ORCID http://orcid.org/0000-0003-4756-9192
Universiti Sains Malaysia · MYUniversity of Malaya · MY

Funding

USM-RIKEN International Centre for Aging Science 1001/PBIOLOGI/870033
6 · The paper itself

Abstract

A novel polyhydroxyalkanoate (PHA)-producing bacterium, Jeongeupia sp. USM3 (JCM 19920) was isolated from the limestone soil at Gua Tempurung, Perak, Malaysia. This is the first report on the complete genome sequence for the genus Jeongeupia. This genome consists of a circular chromosome with a size of 3,788,814 bp and contains 3557 genes. Two PHA synthase (phaC) genes encoding for the key enzyme in the polymerization of PHA monomers and other PHA-associated genes were identified from the genome. Phylogenetic analysis of the PhaC protein sequences has revealed that both PhaC1 and PhaC2 of Jeongeupia sp. USM3 are categorized as Class I PHA synthases with 56% similarity to each other. Both of the PHA synthase genes of this isolate were cloned and heterologously expressed in a PHA mutant strain Cupriavidus necator PHB

Indexed as

Genome, BacterialSoil MicrobiologyAcyltransferasesBetaproteobacteriaCupriavidus necatorMalaysiaPhylogenyPolyhydroxyalkanoatesWhole Genome SequencingAcyltransferasespoly(3-hydroxyalkanoic acid) synthasePolyhydroxyalkanoates

Identifiers

PMID31893298
OpenAlexW2996862724

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.