Evidence map›Paper›PMID 31892943›Full record

ArticleEvolutionary applications2020

Linking genotype to phenotype to identify genetic variation relating to host susceptibility in the mountain pine beetle system.

Catherine I Cullingham, Rhiannon M Peery, Colleen E Fortier, Elizabeth L Mahon, Janice E K Cooke, David W Coltman

Open access · goldAbstract read
In one paragraph

Article in Evolutionary applications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Uncovering natural variation inFrontiers in plant science · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Catherine I CullinghamDepartment of Biological Sciences University of Alberta Edmonton Alberta Canada.ORCID 0000-0002-6715-0674
Rhiannon M PeeryDepartment of Biological Sciences University of Alberta Edmonton Alberta Canada.ORCID 0000-0003-4711-4702
Colleen E FortierDepartment of Biological Sciences University of Alberta Edmonton Alberta Canada.
Elizabeth L MahonDepartment of Biological Sciences University of Alberta Edmonton Alberta Canada.
Janice E K CookeDepartment of Biological Sciences University of Alberta Edmonton Alberta Canada.ORCID 0000-0002-4990-628X
David W ColtmanDepartment of Biological Sciences University of Alberta Edmonton Alberta Canada.ORCID 0000-0002-1268-2307
University of Alberta · CAUniversity of British Columbia · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identifying genetic variants responsible for phenotypic variation under selective pressure has the potential to enable productive gains in natural resource conservation and management. Despite this potential, identifying adaptive candidate loci is not trivial, and linking genotype to phenotype is a major challenge in contemporary genetics. Many of the population genetic approaches commonly used to identify adaptive candidates will simultaneously detect false positives, particularly in nonmodel species, where experimental evidence is seldom provided for putative roles of the adaptive candidates identified by outlier approaches. In this study, we use outcomes from population genetics, phenotype association, and gene expression analyses as multiple lines of evidence to validate candidate genes. Using lodgepole and jack pine as our nonmodel study species, we analyzed 17 adaptive candidate loci together with 78 putatively neutral loci at 58 locations across Canada (

Indexed as

adaptive variationcomplementary validationgene expressionGrosmannia clavigerajack pinelodgepole pinemountain pine beetleoutlier validation

Identifiers

PMID31892943
PMCPMC6935584
OpenAlexW2913675559

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.