Evidence map›Paper›PMID 31891586›Full record

ArticlePloS one2019

A framework for the development of a global standardised marine taxon reference image database (SMarTaR-ID) to support image-based analyses.

Kerry L Howell, Jaime S Davies, A Louise Allcock, Andreia Braga-Henriques, Pål Buhl-Mortensen, Marina Carreiro-Silva, Carlos Dominguez-Carrió, Jennifer M Durden, Nicola L Foster, Chloe A Game and 24 more

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors.

Kerry L HowellSchool of Biological and Marine Science, Plymouth University, Drake Circus, Plymouth, United Kingdom.ORCID 0000-0003-3359-1778
Jaime S DaviesSchool of Biological and Marine Science, Plymouth University, Drake Circus, Plymouth, United Kingdom.ORCID 0000-0002-6902-0937
A Louise AllcockZoology, School of Natural Sciences, and Ryan Institute, National University of Ireland, Galway, Galway, Ireland.
Andreia Braga-HenriquesMARE-Marine and Environmental Sciences Centre, Estação de Biologia Marinha do Funchal, Cais do Carvão, Funchal, Madeira Island, Portugal.
Pål Buhl-MortensenInstitute of Marine Research,Nordnes, Bergen, Norway.
Marina Carreiro-SilvaOkeanos Research Centre, Universidade dos Açores, Departamento de Oceanografia e Pesca, Horta, Portugal.
Carlos Dominguez-CarrióOkeanos Research Centre, Universidade dos Açores, Departamento de Oceanografia e Pesca, Horta, Portugal.ORCID 0000-0002-0025-9376
Jennifer M DurdenNational Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton, United Kingdom.ORCID 0000-0002-6529-9109
Nicola L FosterSchool of Biological and Marine Science, Plymouth University, Drake Circus, Plymouth, United Kingdom.
Chloe A GameSchool of Computing Sciences, University of East Anglia, Norwich, United Kingdom.ORCID 0000-0002-0507-0054
Becky HitchinJNCC, Inverdee House, Aberdeen, United Kingdom.
Tammy HortonNational Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton, United Kingdom.ORCID 0000-0003-4250-1068
Brett HoskingNational Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton, United Kingdom.ORCID 0000-0003-0725-8170
Daniel O B JonesNational Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton, United Kingdom.ORCID 0000-0001-5218-1649
Christopher MahDept. of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington D.C., United States of America.
Claire Laguionie MarchaisZoology, School of Natural Sciences, and Ryan Institute, National University of Ireland, Galway, Galway, Ireland.
Lenaick MenotIfremer, Centre de Bretagne, Plouzané, France.
Telmo MoratoOkeanos Research Centre, Universidade dos Açores, Departamento de Oceanografia e Pesca, Horta, Portugal.
Tabitha R R PearmanNational Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton, United Kingdom.
Nils PiechaudSchool of Biological and Marine Science, Plymouth University, Drake Circus, Plymouth, United Kingdom.
Rebecca E RossSchool of Biological and Marine Science, Plymouth University, Drake Circus, Plymouth, United Kingdom.ORCID 0000-0002-5395-1219
Henry A RuhlNational Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton, United Kingdom.
Hanieh SaeediSenckenberg Research Institute and Natural History Museum; Department of Marine Zoology, Frankfurt am Main, Germany.ORCID 0000-0002-4845-0241
Paris V StefanoudisNekton Foundation, Begbroke Science Park, Begbroke Hill, Begbroke, Oxfordshire, United Kingdom.
Gerald H TarantoOkeanos Research Centre, Universidade dos Açores, Departamento de Oceanografia e Pesca, Horta, Portugal.ORCID 0000-0002-7968-1982
Michael B ThompsonGardline Limited, Endeavour House, Great Yarmouth, Norfolk, United Kingdom.
James R TaylorSenckenberg am Meer, German Centre for Marine Biodiversity Research (DZMB), Martin-Luthur-King-Platz, Hamburg, Germany.
Paul TylerSchool of Ocean and Earth Science National Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton, United Kingdom.
Johanne VadGrant Institute, School of Geosciences, The University of Edinburgh, The King's Buildings, Edinburgh, United Kingdom.
Lissette VictoreroInstitut de Systématique, Évolution, Biodiversité (ISYEB), CNRS, Muséum national d'Histoire naturelle,Sorbonne Université, Ecole Pratique des Hautes Etudes, Paris, France.
Rui P VieiraSenckenberg am Meer, German Centre for Marine Biodiversity Research (DZMB), Martin-Luthur-King-Platz, Hamburg, Germany.
Lucy C WoodallOBIS Data Manager, Deep-Sea Node.
Joana R XavierCIIMAR-Interdisciplinary Centre of Marine and Environmental Research of the University of Porto, Matosinhos, Portugal.
Daniel WagnerNOAA Office of Ocean Exploration and Research, Charleston, South Carolina, United States of America.

Funding

COMPUTER AIDED ANALYSIS OF ELECTROCARDIOGRAPHYZ01CT000002 · CIT · COMPUTER RESEARCH AND TECHNOLOGY · PI BAILEY, JAMES J. · 1985 to 2003
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Intramural NIH HHS Z01 CT000002
6 · The paper itself

Abstract

Video and image data are regularly used in the field of benthic ecology to document biodiversity. However, their use is subject to a number of challenges, principally the identification of taxa within the images without associated physical specimens. The challenge of applying traditional taxonomic keys to the identification of fauna from images has led to the development of personal, group, or institution level reference image catalogues of operational taxonomic units (OTUs) or morphospecies. Lack of standardisation among these reference catalogues has led to problems with observer bias and the inability to combine datasets across studies. In addition, lack of a common reference standard is stifling efforts in the application of artificial intelligence to taxon identification. Using the North Atlantic deep sea as a case study, we propose a database structure to facilitate standardisation of morphospecies image catalogues between research groups and support future use in multiple front-end applications. We also propose a framework for coordination of international efforts to develop reference guides for the identification of marine species from images. The proposed structure maps to the Darwin Core standard to allow integration with existing databases. We suggest a management framework where high-level taxonomic groups are curated by a regional team, consisting of both end users and taxonomic experts. We identify a mechanism by which overall quality of data within a common reference guide could be raised over the next decade. Finally, we discuss the role of a common reference standard in advancing marine ecology and supporting sustainable use of this ecosystem.

Indexed as

AnimalsArtificial IntelligenceBiodiversityClassificationDatabases, FactualData CurationEcologyEcosystemImage Processing, Computer-AssistedMarine Biology

Identifiers

PMID31891586
PMCPMC6938304

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.