Evidence map›Paper›PMID 31891575›Full record

ArticlePLoS genetics2019

Identification of avoidance genes through neural pathway-specific forward optogenetics.

Filipe Marques, Gabriella Saro, Andrei-Stefan Lia, Richard J Poole, Laurent Falquet, Dominique A Glauser

Abstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. The Thermal Stress Coping Network of the NematodeInternational journal of molecular sciences · 2022
    Review
  8. Article
  9. CaeLife · 2021
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Filipe MarquesDepartment of Biology, University of Fribourg, Fribourg, Switzerland.
Gabriella SaroDepartment of Biology, University of Fribourg, Fribourg, Switzerland.ORCID 0000-0003-4553-0024
Andrei-Stefan LiaDepartment of Biology, University of Fribourg, Fribourg, Switzerland.ORCID 0000-0002-6165-2577
Richard J PooleDepartment of Cell and Developmental Biology, University College London, London, United Kingdom.ORCID 0000-0001-6414-2479
Laurent FalquetDepartment of Biology, University of Fribourg, Fribourg, Switzerland.ORCID 0000-0001-8102-7579
Dominique A GlauserDepartment of Biology, University of Fribourg, Fribourg, Switzerland.ORCID 0000-0002-3228-7304

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
NIH HHS P40 OD010440Wellcome TrustWellcome Trust 207483/Z/17/Z
6 · The paper itself

Abstract

Understanding how the nervous system bridges sensation and behavior requires the elucidation of complex neural and molecular networks. Forward genetic approaches, such as screens conducted in C. elegans, have successfully identified genes required to process natural sensory stimuli. However, functional redundancy within the underlying neural circuits, which are often organized with multiple parallel neural pathways, limits our ability to identify 'neural pathway-specific genes', i.e. genes that are essential for the function of some, but not all of these redundant neural pathways. To overcome this limitation, we developed a 'forward optogenetics' screening strategy in which natural stimuli are initially replaced by the selective optogenetic activation of a specific neural pathway. We used this strategy to address the function of the polymodal FLP nociceptors mediating avoidance of noxious thermal and mechanical stimuli. According to our expectations, we identified both mutations in 'general' avoidance genes that broadly impact avoidance responses to a variety of natural noxious stimuli (unc-4, unc-83, and eat-4) and mutations that produce a narrower impact, more restricted to the FLP pathway (syd-2, unc-14 and unc-68). Through a detailed follow-up analysis, we further showed that the Ryanodine receptor UNC-68 acts cell-autonomously in FLP to adjust heat-evoked calcium signals and aversive behaviors. As a whole, our work (i) reveals the importance of properly regulated ER calcium release for FLP function, (ii) provides new entry points for new nociception research and (iii) demonstrates the utility of our forward optogenetic strategy, which can easily be transposed to analyze other neural pathways.

Indexed as

Avoidance LearningAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCalcium SignalingCytoskeletal ProteinsGene Expression RegulationHomeodomain ProteinsIntercellular Signaling Peptides and ProteinsMembrane ProteinsNuclear ProteinsOptogeneticsReceptors, GlutamateRyanodine Receptor Calcium Release ChannelVesicular Glutamate Transport ProteinsCaenorhabditis elegans ProteinsCytoskeletal ProteinsEat-4 protein, C elegansHomeodomain ProteinsIntercellular Signaling Peptides and ProteinsMembrane ProteinsNuclear ProteinsReceptors, GlutamateRyanodine Receptor Calcium Release ChannelSYD-2 protein, C elegansUNC-14 protein, C elegansunc-4 protein, C elegansUnc-68 protein, C elegansUnc-83 protein, C elegansVesicular Glutamate Transport Proteins

Identifiers

PMID31891575
PMCPMC6938339

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.