Evidence map›Paper›PMID 31888489›Full record

ArticleBMC plant biology2019

Identification and characterization analysis of sulfotransferases (SOTs) gene family in cotton (Gossypium) and its involvement in fiber development.

Liyuan Wang, Xiyan Liu, Xiaoyang Wang, Zhaoe Pan, Xiaoli Geng, Baojun Chen, Baoshen Liu, Xiongming Du, Xianliang Song

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
9.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  4. Plants (Basel, Switzerland) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Liyuan WangState Key Laboratory of Crop Biology/Agronomy College, Shandong Agricultural University, Taian, 271018, China.
Xiyan LiuState Key Laboratory of Crop Biology/Agronomy College, Shandong Agricultural University, Taian, 271018, China.
Xiaoyang WangState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Zhaoe PanState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Xiaoli GengState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Baojun ChenState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Baoshen LiuState Key Laboratory of Crop Biology/Agronomy College, Shandong Agricultural University, Taian, 271018, China.
Xiongming DuState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China. dujeffrey8848@hotmail.com.
Xianliang SongState Key Laboratory of Crop Biology/Agronomy College, Shandong Agricultural University, Taian, 271018, China. songxl999@163.com.ORCID http://orcid.org/0000-0001-8200-5865
Cotton Research Institute · CNShandong Agricultural University · CN

Funding

Innovative Research Group Project of the National Natural Science Foundation of China Grant No. 31621005Key Technology Research and Development Program of Shandong 2018YFD0100303Natural Science Foundation of Shandong Province ZR2017MC057the System of Modern Agriculture Industrial Technology SDAIT-03-03/05
6 · The paper itself

Abstract

backgroundSulfotransferases (SOTs) (EC 2.8.2.-) play a crucial role in the sulphate conjugation reaction involved in plant growth, vigor, stress resistance and pathogen infection. SOTs in Arabidopsis have been carried out and divided into 8 groups. However, the systematic analysis and functional information of SOT family genes in cotton have rarely been reported.

resultsAccording to the results of BLASTP and HMMER, we isolated 46, 46, 76 and 77 SOT genes in the genome G. arboreum, G. raimondii, G. barbadense and G. hirsutum, respectively. A total of 170 in 245 SOTs were further classified into four groups based on the orthologous relationships comparing with Arabidopsis, and tandem replication primarily contributed to the expansion of SOT gene family in G. hirsutum. Expression profiles of the GhSOT showed that most genes exhibited a high level of expression in the stem, leaf, and the initial stage of fiber development. The localization analysis indicated that GhSOT67 expressed in cytoplasm and located in stem and leaf tissue. Additionally, the expression of GhSOT67 were induced and the length of stem and leaf hairs were shortened after gene silencing mediated by Agrobacterium, compared with the blank and negative control plants.

conclusionsOur findings indicated that SOT genes might be associated with fiber development in cotton and provided valuable information for further studies of SOT genes in Gossypium.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantGenes, PlantGossypiumMultigene FamilyPhylogenyPlant ProteinsSulfotransferasesPlant ProteinsSulfotransferasesCottonExpression and regulationFiber developmentPhylogenetic analysisSulfotransferases (SOTs)

Identifiers

PMID31888489
PMCPMC6938023
OpenAlexW2997068444

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